Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2723

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2722 and DvMF_2723 overlap by 14 nucleotidesDvMF_2723 and DvMF_2724 overlap by 11 nucleotidesDvMF_2724 and DvMF_2725 are separated by 355 nucleotides DvMF_2722: DvMF_2722 - Radical SAM domain protein (RefSeq), at 3,445,161 to 3,446,624 _2722 DvMF_2723: DvMF_2723 - Radical SAM domain protein (RefSeq), at 3,446,611 to 3,447,765 _2723 DvMF_2724: DvMF_2724 - hypothetical protein (RefSeq), at 3,447,755 to 3,448,021 _2724 DvMF_2725: DvMF_2725 - Resolvase domain protein (RefSeq), at 3,448,377 to 3,449,063 _2725 Position (kb) 3446 3447 3448Strain fitness (log2 ratio) -1 0 1at 3446.352 kb on - strand, within DvMF_2722at 3446.422 kb on + strand, within DvMF_2722at 3446.480 kb on + strandat 3446.594 kb on - strandat 3447.297 kb on + strand, within DvMF_2723at 3448.083 kb on + strandat 3448.211 kb on - strandat 3448.228 kb on + strandat 3448.388 kb on - strandat 3448.509 kb on - strand, within DvMF_2725at 3448.593 kb on + strand, within DvMF_2725

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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3,446,352 - DvMF_2722 0.81 -0.8
3,446,422 + DvMF_2722 0.86 -0.6
3,446,480 + -0.7
3,446,594 - +0.0
3,447,297 + DvMF_2723 0.59 -1.0
3,448,083 + -0.9
3,448,211 - +0.2
3,448,228 + +0.4
3,448,388 - -0.6
3,448,509 - DvMF_2725 0.19 -1.7
3,448,593 + DvMF_2725 0.31 -0.9

Or see this region's nucleotide sequence