Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2621

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2620 and DvMF_2621 are separated by 10 nucleotidesDvMF_2621 and DvMF_2622 are separated by 17 nucleotides DvMF_2620: DvMF_2620 - nitrogenase MoFe cofactor biosynthesis protein NifE (RefSeq), at 3,309,366 to 3,310,790 _2620 DvMF_2621: DvMF_2621 - Nitrogenase (RefSeq), at 3,310,801 to 3,312,417 _2621 DvMF_2622: DvMF_2622 - nitrogenase cofactor biosynthesis protein NifB (RefSeq), at 3,312,435 to 3,313,718 _2622 Position (kb) 3310 3311 3312 3313Strain fitness (log2 ratio) -3 -2 -1 0 1at 3309.999 kb on - strand, within DvMF_2620at 3310.113 kb on + strand, within DvMF_2620at 3310.113 kb on + strand, within DvMF_2620at 3310.113 kb on + strand, within DvMF_2620at 3310.121 kb on - strand, within DvMF_2620at 3310.121 kb on - strand, within DvMF_2620at 3310.409 kb on + strand, within DvMF_2620at 3310.409 kb on + strand, within DvMF_2620at 3310.417 kb on - strand, within DvMF_2620at 3310.704 kb on + strandat 3310.944 kb on - strandat 3310.951 kb on - strandat 3311.122 kb on - strand, within DvMF_2621at 3311.399 kb on + strand, within DvMF_2621at 3311.467 kb on + strand, within DvMF_2621at 3311.477 kb on + strand, within DvMF_2621at 3311.485 kb on - strand, within DvMF_2621at 3311.585 kb on + strand, within DvMF_2621at 3311.585 kb on + strand, within DvMF_2621at 3311.594 kb on + strand, within DvMF_2621at 3311.627 kb on + strand, within DvMF_2621at 3311.842 kb on - strand, within DvMF_2621at 3311.864 kb on - strand, within DvMF_2621at 3311.926 kb on - strand, within DvMF_2621at 3312.283 kb on + strandat 3312.400 kb on + strandat 3312.591 kb on + strand, within DvMF_2622at 3312.591 kb on + strand, within DvMF_2622at 3312.892 kb on - strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.984 kb on - strand, within DvMF_2622at 3313.004 kb on + strand, within DvMF_2622at 3313.082 kb on - strand, within DvMF_2622at 3313.415 kb on - strand, within DvMF_2622

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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3,309,999 - DvMF_2620 0.44 -0.6
3,310,113 + DvMF_2620 0.52 -1.3
3,310,113 + DvMF_2620 0.52 -0.3
3,310,113 + DvMF_2620 0.52 -0.6
3,310,121 - DvMF_2620 0.53 +0.3
3,310,121 - DvMF_2620 0.53 -0.6
3,310,409 + DvMF_2620 0.73 -0.9
3,310,409 + DvMF_2620 0.73 -2.0
3,310,417 - DvMF_2620 0.74 -0.9
3,310,704 + -1.0
3,310,944 - -0.2
3,310,951 - -0.5
3,311,122 - DvMF_2621 0.20 -2.1
3,311,399 + DvMF_2621 0.37 -0.3
3,311,467 + DvMF_2621 0.41 -0.3
3,311,477 + DvMF_2621 0.42 -1.0
3,311,485 - DvMF_2621 0.42 -1.8
3,311,585 + DvMF_2621 0.48 -0.4
3,311,585 + DvMF_2621 0.48 -0.6
3,311,594 + DvMF_2621 0.49 -0.9
3,311,627 + DvMF_2621 0.51 -0.4
3,311,842 - DvMF_2621 0.64 -2.8
3,311,864 - DvMF_2621 0.66 -0.0
3,311,926 - DvMF_2621 0.70 -1.2
3,312,283 + -2.0
3,312,400 + -0.7
3,312,591 + DvMF_2622 0.12 -0.3
3,312,591 + DvMF_2622 0.12 -1.0
3,312,892 - DvMF_2622 0.36 +0.3
3,312,976 + DvMF_2622 0.42 -0.4
3,312,976 + DvMF_2622 0.42 +0.3
3,312,976 + DvMF_2622 0.42 -0.3
3,312,976 + DvMF_2622 0.42 -1.2
3,312,984 - DvMF_2622 0.43 -0.5
3,313,004 + DvMF_2622 0.44 +0.2
3,313,082 - DvMF_2622 0.50 -0.0
3,313,415 - DvMF_2622 0.76 -0.3

Or see this region's nucleotide sequence