Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2532

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2531 and DvMF_2532 are separated by 58 nucleotidesDvMF_2532 and DvMF_2533 are separated by 323 nucleotides DvMF_2531: DvMF_2531 - cytochrome bd-type quinol oxidase subunit 1-like protein (RefSeq), at 3,193,053 to 3,194,360 _2531 DvMF_2532: DvMF_2532 - cytochrome c class III (RefSeq), at 3,194,419 to 3,196,350 _2532 DvMF_2533: DvMF_2533 - formate dehydrogenase, alpha subunit (RefSeq), at 3,196,674 to 3,199,706 _2533 Position (kb) 3194 3195 3196 3197Strain fitness (log2 ratio) -3 -2 -1 0 1at 3193.492 kb on - strand, within DvMF_2531at 3193.533 kb on - strand, within DvMF_2531at 3193.801 kb on - strand, within DvMF_2531at 3193.803 kb on - strand, within DvMF_2531at 3193.828 kb on - strand, within DvMF_2531at 3193.841 kb on - strand, within DvMF_2531at 3193.915 kb on - strand, within DvMF_2531at 3193.955 kb on + strand, within DvMF_2531at 3194.238 kb on - strandat 3194.564 kb on - strandat 3194.815 kb on + strand, within DvMF_2532at 3194.815 kb on + strand, within DvMF_2532at 3194.815 kb on + strand, within DvMF_2532at 3194.823 kb on - strand, within DvMF_2532at 3194.949 kb on + strand, within DvMF_2532at 3195.079 kb on - strand, within DvMF_2532at 3195.080 kb on - strand, within DvMF_2532at 3195.156 kb on - strand, within DvMF_2532at 3195.261 kb on - strand, within DvMF_2532at 3195.277 kb on + strand, within DvMF_2532at 3195.307 kb on + strand, within DvMF_2532at 3195.529 kb on + strand, within DvMF_2532at 3195.537 kb on - strand, within DvMF_2532at 3196.009 kb on - strand, within DvMF_2532at 3196.035 kb on + strand, within DvMF_2532at 3196.152 kb on - strand, within DvMF_2532at 3196.296 kb on + strandat 3196.361 kb on - strandat 3196.445 kb on - strandat 3196.761 kb on - strandat 3196.761 kb on - strandat 3196.821 kb on - strandat 3196.853 kb on + strandat 3197.160 kb on - strand, within DvMF_2533at 3197.193 kb on + strand, within DvMF_2533

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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3,193,492 - DvMF_2531 0.34 -0.4
3,193,533 - DvMF_2531 0.37 -0.4
3,193,801 - DvMF_2531 0.57 -0.5
3,193,803 - DvMF_2531 0.57 -0.3
3,193,828 - DvMF_2531 0.59 +1.1
3,193,841 - DvMF_2531 0.60 -0.3
3,193,915 - DvMF_2531 0.66 -0.7
3,193,955 + DvMF_2531 0.69 -0.8
3,194,238 - +0.0
3,194,564 - -0.4
3,194,815 + DvMF_2532 0.20 -0.2
3,194,815 + DvMF_2532 0.20 +0.1
3,194,815 + DvMF_2532 0.20 -0.2
3,194,823 - DvMF_2532 0.21 +0.5
3,194,949 + DvMF_2532 0.27 -1.0
3,195,079 - DvMF_2532 0.34 -0.2
3,195,080 - DvMF_2532 0.34 -1.0
3,195,156 - DvMF_2532 0.38 -2.3
3,195,261 - DvMF_2532 0.44 -0.9
3,195,277 + DvMF_2532 0.44 -3.4
3,195,307 + DvMF_2532 0.46 -0.8
3,195,529 + DvMF_2532 0.57 -1.5
3,195,537 - DvMF_2532 0.58 -0.1
3,196,009 - DvMF_2532 0.82 -0.7
3,196,035 + DvMF_2532 0.84 -0.4
3,196,152 - DvMF_2532 0.90 -1.5
3,196,296 + +0.2
3,196,361 - -2.9
3,196,445 - +1.1
3,196,761 - -1.0
3,196,761 - -0.5
3,196,821 - -0.8
3,196,853 + -1.4
3,197,160 - DvMF_2533 0.16 -0.8
3,197,193 + DvMF_2533 0.17 +0.5

Or see this region's nucleotide sequence