Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2486

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2485 and DvMF_2486 overlap by 10 nucleotidesDvMF_2486 and DvMF_2487 overlap by 4 nucleotidesDvMF_2487 and DvMF_2488 are separated by 5 nucleotides DvMF_2485: DvMF_2485 - ABC transporter related (RefSeq), at 3,137,784 to 3,138,614 _2485 DvMF_2486: DvMF_2486 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,138,605 to 3,139,561 _2486 DvMF_2487: DvMF_2487 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,139,558 to 3,140,505 _2487 DvMF_2488: DvMF_2488 - phosphate binding protein (RefSeq), at 3,140,511 to 3,141,353 _2488 Position (kb) 3138 3139 3140Strain fitness (log2 ratio) -3 -2 -1 0 1at 3137.644 kb on - strandat 3137.684 kb on - strandat 3137.707 kb on + strandat 3137.734 kb on + strandat 3137.914 kb on - strand, within DvMF_2485at 3138.001 kb on + strand, within DvMF_2485at 3138.131 kb on + strand, within DvMF_2485at 3138.234 kb on - strand, within DvMF_2485at 3138.290 kb on - strand, within DvMF_2485at 3138.336 kb on - strand, within DvMF_2485at 3138.370 kb on + strand, within DvMF_2485at 3138.378 kb on - strand, within DvMF_2485at 3138.387 kb on + strand, within DvMF_2485at 3138.581 kb on + strandat 3138.738 kb on + strand, within DvMF_2486at 3138.748 kb on + strand, within DvMF_2486at 3138.816 kb on + strand, within DvMF_2486at 3138.819 kb on - strand, within DvMF_2486at 3138.819 kb on - strand, within DvMF_2486at 3138.872 kb on - strand, within DvMF_2486at 3138.878 kb on - strand, within DvMF_2486at 3138.880 kb on + strand, within DvMF_2486at 3138.960 kb on - strand, within DvMF_2486at 3138.971 kb on - strand, within DvMF_2486at 3139.074 kb on + strand, within DvMF_2486at 3139.105 kb on + strand, within DvMF_2486at 3139.244 kb on + strand, within DvMF_2486at 3139.276 kb on + strand, within DvMF_2486at 3139.284 kb on - strand, within DvMF_2486at 3139.367 kb on - strand, within DvMF_2486at 3139.376 kb on + strand, within DvMF_2486at 3139.698 kb on - strand, within DvMF_2487at 3139.725 kb on + strand, within DvMF_2487at 3139.993 kb on + strand, within DvMF_2487at 3140.025 kb on + strand, within DvMF_2487at 3140.025 kb on + strand, within DvMF_2487at 3140.035 kb on - strand, within DvMF_2487at 3140.298 kb on - strand, within DvMF_2487at 3140.340 kb on - strand, within DvMF_2487at 3140.368 kb on + strand, within DvMF_2487at 3140.403 kb on - strand, within DvMF_2487at 3140.487 kb on + strandat 3140.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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3,137,644 - -0.4
3,137,684 - +0.1
3,137,707 + -1.4
3,137,734 + -0.6
3,137,914 - DvMF_2485 0.16 -0.5
3,138,001 + DvMF_2485 0.26 -0.4
3,138,131 + DvMF_2485 0.42 -1.0
3,138,234 - DvMF_2485 0.54 -1.3
3,138,290 - DvMF_2485 0.61 +0.1
3,138,336 - DvMF_2485 0.66 +0.0
3,138,370 + DvMF_2485 0.71 -3.3
3,138,378 - DvMF_2485 0.71 +0.3
3,138,387 + DvMF_2485 0.73 -0.7
3,138,581 + +0.7
3,138,738 + DvMF_2486 0.14 +0.0
3,138,748 + DvMF_2486 0.15 -0.2
3,138,816 + DvMF_2486 0.22 +0.3
3,138,819 - DvMF_2486 0.22 +0.1
3,138,819 - DvMF_2486 0.22 -0.9
3,138,872 - DvMF_2486 0.28 -1.7
3,138,878 - DvMF_2486 0.29 +1.2
3,138,880 + DvMF_2486 0.29 -1.9
3,138,960 - DvMF_2486 0.37 -1.7
3,138,971 - DvMF_2486 0.38 -1.0
3,139,074 + DvMF_2486 0.49 -0.3
3,139,105 + DvMF_2486 0.52 -0.7
3,139,244 + DvMF_2486 0.67 -0.3
3,139,276 + DvMF_2486 0.70 +0.4
3,139,284 - DvMF_2486 0.71 -1.4
3,139,367 - DvMF_2486 0.80 +0.0
3,139,376 + DvMF_2486 0.81 -0.1
3,139,698 - DvMF_2487 0.15 -0.1
3,139,725 + DvMF_2487 0.18 -0.7
3,139,993 + DvMF_2487 0.46 -0.6
3,140,025 + DvMF_2487 0.49 -0.4
3,140,025 + DvMF_2487 0.49 -0.0
3,140,035 - DvMF_2487 0.50 -0.5
3,140,298 - DvMF_2487 0.78 -0.5
3,140,340 - DvMF_2487 0.82 -0.6
3,140,368 + DvMF_2487 0.85 -0.9
3,140,403 - DvMF_2487 0.89 -0.0
3,140,487 + -0.6
3,140,525 - -1.2

Or see this region's nucleotide sequence