Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1980

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1978 and DvMF_1979 are separated by 103 nucleotidesDvMF_1979 and DvMF_1980 are separated by 273 nucleotidesDvMF_1980 and DvMF_1981 are separated by 510 nucleotides DvMF_1978: DvMF_1978 - hypothetical protein (RefSeq), at 2,448,257 to 2,448,454 _1978 DvMF_1979: DvMF_1979 - hypothetical protein (RefSeq), at 2,448,558 to 2,449,097 _1979 DvMF_1980: DvMF_1980 - hypothetical protein (RefSeq), at 2,449,371 to 2,449,688 _1980 DvMF_1981: DvMF_1981 - Ferritin Dps family protein (RefSeq), at 2,450,199 to 2,450,798 _1981 Position (kb) 2449 2450Strain fitness (log2 ratio) -1 0 1at 2448.515 kb on - strandat 2448.605 kb on + strandat 2448.821 kb on + strand, within DvMF_1979at 2448.837 kb on - strand, within DvMF_1979at 2449.024 kb on + strand, within DvMF_1979at 2449.024 kb on + strand, within DvMF_1979at 2449.034 kb on + strand, within DvMF_1979at 2449.162 kb on + strandat 2449.202 kb on - strandat 2449.204 kb on + strandat 2449.610 kb on + strand, within DvMF_1980at 2449.710 kb on - strandat 2449.909 kb on + strandat 2449.983 kb on + strandat 2450.266 kb on - strand, within DvMF_1981at 2450.454 kb on - strand, within DvMF_1981at 2450.506 kb on + strand, within DvMF_1981

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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2,448,515 - -0.2
2,448,605 + -0.9
2,448,821 + DvMF_1979 0.49 -0.7
2,448,837 - DvMF_1979 0.52 +0.7
2,449,024 + DvMF_1979 0.86 +0.4
2,449,024 + DvMF_1979 0.86 -0.0
2,449,034 + DvMF_1979 0.88 -0.1
2,449,162 + +1.4
2,449,202 - -0.1
2,449,204 + -0.3
2,449,610 + DvMF_1980 0.75 -1.3
2,449,710 - -0.1
2,449,909 + -1.6
2,449,983 + -0.9
2,450,266 - DvMF_1981 0.11 -0.7
2,450,454 - DvMF_1981 0.42 -0.8
2,450,506 + DvMF_1981 0.51 -0.1

Or see this region's nucleotide sequence