Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1840

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1839 and DvMF_1840 are separated by 329 nucleotidesDvMF_1840 and DvMF_1841 are separated by 1 nucleotidesDvMF_1841 and DvMF_1842 are separated by 68 nucleotides DvMF_1839: DvMF_1839 - Methyltransferase type 11 (RefSeq), at 2,248,902 to 2,250,038 _1839 DvMF_1840: DvMF_1840 - CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (RefSeq), at 2,250,368 to 2,251,525 _1840 DvMF_1841: DvMF_1841 - UDP-N-acetylglucosamine pyrophosphorylase related protein (RefSeq), at 2,251,527 to 2,252,204 _1841 DvMF_1842: DvMF_1842 - glycosyl transferase family 2 (RefSeq), at 2,252,273 to 2,254,927 _1842 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -3 -2 -1 0 1at 2249.398 kb on - strand, within DvMF_1839at 2249.484 kb on + strand, within DvMF_1839at 2249.484 kb on + strand, within DvMF_1839at 2249.492 kb on - strand, within DvMF_1839at 2249.492 kb on - strand, within DvMF_1839at 2249.750 kb on + strand, within DvMF_1839at 2249.816 kb on + strand, within DvMF_1839at 2249.818 kb on - strand, within DvMF_1839at 2249.828 kb on - strand, within DvMF_1839at 2249.906 kb on + strand, within DvMF_1839at 2250.041 kb on - strandat 2250.780 kb on - strand, within DvMF_1840at 2250.889 kb on + strand, within DvMF_1840at 2250.960 kb on + strand, within DvMF_1840at 2251.403 kb on + strand, within DvMF_1840at 2251.527 kb on - strandat 2251.601 kb on + strand, within DvMF_1841at 2251.835 kb on - strand, within DvMF_1841at 2251.837 kb on + strand, within DvMF_1841at 2252.088 kb on - strand, within DvMF_1841

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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2,249,398 - DvMF_1839 0.44 -0.5
2,249,484 + DvMF_1839 0.51 -1.5
2,249,484 + DvMF_1839 0.51 -0.9
2,249,492 - DvMF_1839 0.52 -1.5
2,249,492 - DvMF_1839 0.52 -0.8
2,249,750 + DvMF_1839 0.75 -0.3
2,249,816 + DvMF_1839 0.80 -3.0
2,249,818 - DvMF_1839 0.81 +0.1
2,249,828 - DvMF_1839 0.81 -1.8
2,249,906 + DvMF_1839 0.88 -0.3
2,250,041 - -1.5
2,250,780 - DvMF_1840 0.36 +0.4
2,250,889 + DvMF_1840 0.45 +0.5
2,250,960 + DvMF_1840 0.51 +0.1
2,251,403 + DvMF_1840 0.89 -0.4
2,251,527 - -0.1
2,251,601 + DvMF_1841 0.11 -0.3
2,251,835 - DvMF_1841 0.45 +0.2
2,251,837 + DvMF_1841 0.46 +0.9
2,252,088 - DvMF_1841 0.83 +0.4

Or see this region's nucleotide sequence