Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1739

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1738 and DvMF_1739 are separated by 315 nucleotidesDvMF_1739 and trpA are separated by 382 nucleotides DvMF_1738: DvMF_1738 - hypothetical protein (RefSeq), at 2,125,052 to 2,125,678 _1738 DvMF_1739: DvMF_1739 - isocitrate/isopropylmalate dehydrogenase (RefSeq), at 2,125,994 to 2,127,142 _1739 DvMF_1740: trpA - tryptophan synthase subunit alpha (RefSeq), at 2,127,525 to 2,128,337 trpA Position (kb) 2125 2126 2127 2128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2125.373 kb on - strand, within DvMF_1738at 2125.439 kb on - strand, within DvMF_1738at 2125.439 kb on - strand, within DvMF_1738at 2125.454 kb on - strand, within DvMF_1738at 2125.464 kb on - strand, within DvMF_1738at 2125.477 kb on - strand, within DvMF_1738at 2125.548 kb on + strand, within DvMF_1738at 2125.715 kb on + strandat 2125.776 kb on + strandat 2125.975 kb on + strandat 2126.193 kb on + strand, within DvMF_1739at 2127.519 kb on - strandat 2127.524 kb on - strandat 2127.747 kb on + strand, within trpA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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2,125,373 - DvMF_1738 0.51 -0.5
2,125,439 - DvMF_1738 0.62 +0.5
2,125,439 - DvMF_1738 0.62 -0.8
2,125,454 - DvMF_1738 0.64 +1.4
2,125,464 - DvMF_1738 0.66 +0.1
2,125,477 - DvMF_1738 0.68 -1.0
2,125,548 + DvMF_1738 0.79 -1.5
2,125,715 + -0.8
2,125,776 + -2.5
2,125,975 + -1.0
2,126,193 + DvMF_1739 0.17 +0.3
2,127,519 - +0.9
2,127,524 - -0.1
2,127,747 + trpA DvMF_1740 0.27 -4.0

Or see this region's nucleotide sequence