Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1672

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1670 and DvMF_1671 are separated by 170 nucleotidesDvMF_1671 and DvMF_1672 overlap by 4 nucleotides DvMF_1670: DvMF_1670 - hypothetical protein (RefSeq), at 2,042,145 to 2,042,438 _1670 DvMF_1671: DvMF_1671 - hypothetical protein (RefSeq), at 2,042,609 to 2,043,241 _1671 DvMF_1672: DvMF_1672 - hypothetical protein (RefSeq), at 2,043,238 to 2,044,095 _1672 Position (kb) 2043 2044 2045Strain fitness (log2 ratio) -3 -2 -1 0 1at 2042.309 kb on - strand, within DvMF_1670at 2042.525 kb on - strandat 2042.833 kb on + strand, within DvMF_1671at 2043.129 kb on - strand, within DvMF_1671at 2043.164 kb on + strand, within DvMF_1671at 2043.191 kb on - strandat 2043.231 kb on + strandat 2043.244 kb on - strandat 2043.284 kb on - strandat 2043.320 kb on + strandat 2043.327 kb on + strand, within DvMF_1672at 2043.656 kb on - strand, within DvMF_1672at 2043.935 kb on + strand, within DvMF_1672at 2043.943 kb on - strand, within DvMF_1672at 2044.034 kb on + strandat 2044.098 kb on - strandat 2044.132 kb on - strandat 2044.193 kb on + strandat 2044.318 kb on + strandat 2044.658 kb on + strandat 2044.839 kb on + strandat 2044.889 kb on + strandat 2044.913 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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2,042,309 - DvMF_1670 0.56 -0.4
2,042,525 - -0.0
2,042,833 + DvMF_1671 0.35 -0.6
2,043,129 - DvMF_1671 0.82 -1.0
2,043,164 + DvMF_1671 0.88 -0.3
2,043,191 - -0.9
2,043,231 + -1.9
2,043,244 - -0.3
2,043,284 - -1.4
2,043,320 + -0.1
2,043,327 + DvMF_1672 0.10 +0.2
2,043,656 - DvMF_1672 0.49 -2.9
2,043,935 + DvMF_1672 0.81 -0.2
2,043,943 - DvMF_1672 0.82 +0.2
2,044,034 + -0.9
2,044,098 - -0.6
2,044,132 - -0.7
2,044,193 + +0.1
2,044,318 + +0.5
2,044,658 + -0.3
2,044,839 + -1.5
2,044,889 + -1.7
2,044,913 + +1.3

Or see this region's nucleotide sequence