Experiment: MoLS4 minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1625 and DvMF_1626 are separated by 269 nucleotides DvMF_1626 and DvMF_1627 overlap by 4 nucleotides DvMF_1627 and DvMF_1628 overlap by 4 nucleotides
DvMF_1625: DvMF_1625 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,003,053 to 2,004,765
_1625
DvMF_1626: DvMF_1626 - Calcium-binding EF-hand-containing protein (RefSeq), at 2,005,035 to 2,005,523
_1626
DvMF_1627: DvMF_1627 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,005,520 to 2,007,136
_1627
DvMF_1628: DvMF_1628 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,007,133 to 2,008,284
_1628
Position (kb)
2005
2006
2007
2008 Strain fitness (log2 ratio)
-2
-1
0
1 at 2004.821 kb on + strand at 2004.903 kb on + strand at 2005.119 kb on + strand, within DvMF_1626 at 2005.119 kb on + strand, within DvMF_1626 at 2005.292 kb on + strand, within DvMF_1626 at 2005.352 kb on + strand, within DvMF_1626 at 2005.410 kb on - strand, within DvMF_1626 at 2005.527 kb on - strand at 2005.532 kb on + strand at 2005.632 kb on + strand at 2005.637 kb on + strand at 2005.650 kb on - strand at 2005.685 kb on + strand, within DvMF_1627 at 2005.695 kb on + strand, within DvMF_1627 at 2005.836 kb on - strand, within DvMF_1627 at 2005.903 kb on - strand, within DvMF_1627 at 2005.966 kb on + strand, within DvMF_1627 at 2006.038 kb on + strand, within DvMF_1627 at 2006.480 kb on - strand, within DvMF_1627 at 2006.609 kb on + strand, within DvMF_1627 at 2006.819 kb on + strand, within DvMF_1627 at 2006.849 kb on - strand, within DvMF_1627 at 2007.168 kb on + strand at 2007.177 kb on - strand at 2007.209 kb on - strand at 2007.283 kb on - strand, within DvMF_1628 at 2007.349 kb on - strand, within DvMF_1628 at 2007.686 kb on - strand, within DvMF_1628 at 2007.765 kb on - strand, within DvMF_1628 at 2007.772 kb on - strand, within DvMF_1628 at 2007.799 kb on - strand, within DvMF_1628 at 2008.068 kb on + strand, within DvMF_1628
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 minimal media remove 2,004,821 + -0.7 2,004,903 + -0.9 2,005,119 + DvMF_1626 0.17 +1.1 2,005,119 + DvMF_1626 0.17 -0.9 2,005,292 + DvMF_1626 0.53 -0.3 2,005,352 + DvMF_1626 0.65 -1.5 2,005,410 - DvMF_1626 0.77 -0.4 2,005,527 - -0.9 2,005,532 + +1.1 2,005,632 + -0.8 2,005,637 + -0.2 2,005,650 - -1.0 2,005,685 + DvMF_1627 0.10 -0.4 2,005,695 + DvMF_1627 0.11 -1.5 2,005,836 - DvMF_1627 0.20 -0.4 2,005,903 - DvMF_1627 0.24 -0.5 2,005,966 + DvMF_1627 0.28 -0.0 2,006,038 + DvMF_1627 0.32 -1.4 2,006,480 - DvMF_1627 0.59 -0.4 2,006,609 + DvMF_1627 0.67 -0.3 2,006,819 + DvMF_1627 0.80 -0.3 2,006,849 - DvMF_1627 0.82 -0.7 2,007,168 + -0.8 2,007,177 - -1.5 2,007,209 - -0.5 2,007,283 - DvMF_1628 0.13 -0.6 2,007,349 - DvMF_1628 0.19 -0.6 2,007,686 - DvMF_1628 0.48 -1.4 2,007,765 - DvMF_1628 0.55 -0.8 2,007,772 - DvMF_1628 0.55 -0.7 2,007,799 - DvMF_1628 0.58 -0.7 2,008,068 + DvMF_1628 0.81 -1.8
Or see this region's nucleotide sequence