Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1589

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1588 and DvMF_1589 are separated by 10 nucleotidesDvMF_1589 and DvMF_1590 are separated by 557 nucleotides DvMF_1588: DvMF_1588 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,957,021 to 1,958,712 _1588 DvMF_1589: DvMF_1589 - ABC transporter related (RefSeq), at 1,958,723 to 1,959,787 _1589 DvMF_1590: DvMF_1590 - glutamine synthetase catalytic region (RefSeq), at 1,960,345 to 1,962,525 _1590 Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -1 0 1at 1957.801 kb on - strand, within DvMF_1588at 1958.077 kb on + strand, within DvMF_1588at 1958.115 kb on - strand, within DvMF_1588at 1958.171 kb on + strand, within DvMF_1588at 1958.347 kb on + strand, within DvMF_1588at 1958.352 kb on + strand, within DvMF_1588at 1958.597 kb on + strandat 1958.858 kb on - strand, within DvMF_1589at 1959.014 kb on + strand, within DvMF_1589at 1959.097 kb on - strand, within DvMF_1589at 1959.107 kb on - strand, within DvMF_1589at 1959.167 kb on + strand, within DvMF_1589at 1959.228 kb on + strand, within DvMF_1589at 1959.566 kb on + strand, within DvMF_1589at 1959.681 kb on + strandat 1959.725 kb on + strandat 1959.768 kb on + strandat 1959.890 kb on - strandat 1959.951 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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1,957,801 - DvMF_1588 0.46 -1.0
1,958,077 + DvMF_1588 0.62 -0.2
1,958,115 - DvMF_1588 0.65 +0.8
1,958,171 + DvMF_1588 0.68 -0.5
1,958,347 + DvMF_1588 0.78 +0.7
1,958,352 + DvMF_1588 0.79 -0.9
1,958,597 + -0.6
1,958,858 - DvMF_1589 0.13 +1.1
1,959,014 + DvMF_1589 0.27 -0.6
1,959,097 - DvMF_1589 0.35 -0.4
1,959,107 - DvMF_1589 0.36 -0.7
1,959,167 + DvMF_1589 0.42 -0.9
1,959,228 + DvMF_1589 0.47 -0.0
1,959,566 + DvMF_1589 0.79 -0.9
1,959,681 + -0.3
1,959,725 + -0.8
1,959,768 + -0.6
1,959,890 - -0.8
1,959,951 + -0.5

Or see this region's nucleotide sequence