Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1547

Experiment: MoLS4 minimal media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1545 and DvMF_1546 are separated by 5 nucleotidesDvMF_1546 and DvMF_1547 are separated by 153 nucleotidesDvMF_1547 and DvMF_1548 are separated by 234 nucleotides DvMF_1545: DvMF_1545 - hypothetical protein (RefSeq), at 1,908,197 to 1,908,547 _1545 DvMF_1546: DvMF_1546 - hypothetical protein (RefSeq), at 1,908,553 to 1,909,158 _1546 DvMF_1547: DvMF_1547 - glycosyl transferase family 9 (RefSeq), at 1,909,312 to 1,911,069 _1547 DvMF_1548: DvMF_1548 - rare lipoprotein A (RefSeq), at 1,911,304 to 1,912,083 _1548 Position (kb) 1909 1910 1911 1912Strain fitness (log2 ratio) -3 -2 -1 0 1at 1908.588 kb on + strandat 1909.282 kb on - strandat 1909.430 kb on - strandat 1909.610 kb on + strand, within DvMF_1547at 1909.610 kb on + strand, within DvMF_1547at 1909.610 kb on + strand, within DvMF_1547at 1909.959 kb on - strand, within DvMF_1547at 1910.033 kb on + strand, within DvMF_1547at 1910.092 kb on + strand, within DvMF_1547at 1910.131 kb on + strand, within DvMF_1547at 1910.261 kb on + strand, within DvMF_1547at 1910.574 kb on - strand, within DvMF_1547at 1910.803 kb on + strand, within DvMF_1547at 1910.842 kb on - strand, within DvMF_1547at 1910.927 kb on + strandat 1910.927 kb on + strandat 1911.047 kb on + strandat 1911.064 kb on + strandat 1911.076 kb on + strandat 1911.230 kb on - strandat 1911.267 kb on - strandat 1911.297 kb on + strandat 1911.406 kb on + strand, within DvMF_1548at 1911.691 kb on - strand, within DvMF_1548at 1911.691 kb on - strand, within DvMF_1548at 1911.890 kb on + strand, within DvMF_1548at 1912.055 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
remove
1,908,588 + +0.9
1,909,282 - +0.3
1,909,430 - +0.5
1,909,610 + DvMF_1547 0.17 +0.4
1,909,610 + DvMF_1547 0.17 +0.4
1,909,610 + DvMF_1547 0.17 +0.2
1,909,959 - DvMF_1547 0.37 +0.2
1,910,033 + DvMF_1547 0.41 +0.0
1,910,092 + DvMF_1547 0.44 +0.3
1,910,131 + DvMF_1547 0.47 +0.3
1,910,261 + DvMF_1547 0.54 +0.3
1,910,574 - DvMF_1547 0.72 +0.0
1,910,803 + DvMF_1547 0.85 +0.6
1,910,842 - DvMF_1547 0.87 +0.5
1,910,927 + +0.6
1,910,927 + +0.3
1,911,047 + +0.7
1,911,064 + +0.1
1,911,076 + -0.7
1,911,230 - -0.2
1,911,267 - -0.4
1,911,297 + -0.8
1,911,406 + DvMF_1548 0.13 -1.2
1,911,691 - DvMF_1548 0.50 -3.7
1,911,691 - DvMF_1548 0.50 +0.7
1,911,890 + DvMF_1548 0.75 -0.9
1,912,055 - -1.5

Or see this region's nucleotide sequence