Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1486

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1485 and DvMF_1486 are separated by 138 nucleotidesDvMF_1486 and DvMF_1487 are separated by 63 nucleotides DvMF_1485: DvMF_1485 - glutaminyl-tRNA synthetase (RefSeq), at 1,820,831 to 1,822,540 _1485 DvMF_1486: DvMF_1486 - GTPase EngC (RefSeq), at 1,822,679 to 1,823,794 _1486 DvMF_1487: DvMF_1487 - GCN5-related N-acetyltransferase (RefSeq), at 1,823,858 to 1,824,394 _1487 Position (kb) 1822 1823 1824Strain fitness (log2 ratio) -2 -1 0 1at 1822.733 kb on - strandat 1822.838 kb on + strand, within DvMF_1486at 1823.065 kb on + strand, within DvMF_1486at 1823.226 kb on - strand, within DvMF_1486at 1823.418 kb on + strand, within DvMF_1486at 1823.485 kb on + strand, within DvMF_1486at 1823.505 kb on + strand, within DvMF_1486at 1823.521 kb on - strand, within DvMF_1486at 1823.711 kb on + strandat 1823.714 kb on - strandat 1823.958 kb on - strand, within DvMF_1487at 1823.968 kb on - strand, within DvMF_1487at 1824.076 kb on - strand, within DvMF_1487at 1824.087 kb on + strand, within DvMF_1487at 1824.146 kb on + strand, within DvMF_1487at 1824.267 kb on + strand, within DvMF_1487at 1824.324 kb on + strand, within DvMF_1487at 1824.381 kb on + strandat 1824.599 kb on - strandat 1824.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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1,822,733 - +0.9
1,822,838 + DvMF_1486 0.14 -0.5
1,823,065 + DvMF_1486 0.35 -0.3
1,823,226 - DvMF_1486 0.49 +0.4
1,823,418 + DvMF_1486 0.66 +1.1
1,823,485 + DvMF_1486 0.72 +0.2
1,823,505 + DvMF_1486 0.74 -0.5
1,823,521 - DvMF_1486 0.75 -0.4
1,823,711 + -0.2
1,823,714 - -0.5
1,823,958 - DvMF_1487 0.19 -1.1
1,823,968 - DvMF_1487 0.20 -0.3
1,824,076 - DvMF_1487 0.41 -1.0
1,824,087 + DvMF_1487 0.43 -1.0
1,824,146 + DvMF_1487 0.54 -0.0
1,824,267 + DvMF_1487 0.76 -2.0
1,824,324 + DvMF_1487 0.87 -0.7
1,824,381 + -0.4
1,824,599 - -0.3
1,824,778 - -0.4

Or see this region's nucleotide sequence