Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0969

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0968 and rplM are separated by 506 nucleotidesrplM and rpsI are separated by 22 nucleotidesrpsI and aroK are separated by 259 nucleotides DvMF_0968: DvMF_0968 - hypothetical protein (RefSeq), at 1,174,798 to 1,176,069 _0968 DvMF_0969: rplM - 50S ribosomal protein L13 (RefSeq), at 1,176,576 to 1,177,010 rplM DvMF_0970: rpsI - 30S ribosomal protein S9 (RefSeq), at 1,177,033 to 1,177,425 rpsI DvMF_0971: aroK - Homoserine kinase (EC:2.7.1.39) (from data), at 1,177,685 to 1,178,242 aroK Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1175.657 kb on - strand, within DvMF_0968at 1175.811 kb on - strand, within DvMF_0968at 1175.958 kb on + strandat 1175.972 kb on + strandat 1176.193 kb on - strandat 1176.286 kb on - strandat 1177.553 kb on - strandat 1177.772 kb on + strand, within aroKat 1177.891 kb on - strand, within aroKat 1177.969 kb on - strand, within aroK

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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1,175,657 - DvMF_0968 0.68 -0.9
1,175,811 - DvMF_0968 0.80 -0.7
1,175,958 + -1.5
1,175,972 + -2.9
1,176,193 - -0.5
1,176,286 - -0.7
1,177,553 - -0.3
1,177,772 + aroK DvMF_0971 0.16 -4.0
1,177,891 - aroK DvMF_0971 0.37 -5.0
1,177,969 - aroK DvMF_0971 0.51 -4.7

Or see this region's nucleotide sequence