Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3339

Experiment: Pyruvate (fermenting) with Na2S as sulfur source

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pyruvate (fermenting) with Na2S as sulfur source
3,513,222	-	kdpB	DVU3338	0.52	-0.2
3,513,222	-	kdpB	DVU3338	0.52	-0.1
3,513,222	-	kdpB	DVU3338	0.52	-0.2
3,513,222	-	kdpB	DVU3338	0.52	-1.0
3,513,222	-	kdpB	DVU3338	0.52	+0.2
3,513,233	-	kdpB	DVU3338	0.52	+0.5
3,513,471	+	kdpB	DVU3338	0.64	+0.1
3,513,481	+	kdpB	DVU3338	0.64	-0.7
3,513,481	+	kdpB	DVU3338	0.64	-1.1
3,513,486	+	kdpB	DVU3338	0.65	-1.1
3,513,489	-	kdpB	DVU3338	0.65	-0.8
3,513,489	-	kdpB	DVU3338	0.65	-0.1
3,513,489	-	kdpB	DVU3338	0.65	+0.2
3,513,500	+	kdpB	DVU3338	0.65	-0.2
3,513,507	-	kdpB	DVU3338	0.66	-0.1
3,513,515	-	kdpB	DVU3338	0.66	-0.3
3,513,540	-	kdpB	DVU3338	0.67	-1.3
3,513,563	-	kdpB	DVU3338	0.68	+1.0
3,513,563	-	kdpB	DVU3338	0.68	-0.2
3,513,568	-	kdpB	DVU3338	0.69	+0.1
3,513,607	+	kdpB	DVU3338	0.71	-0.0
3,513,670	-	kdpB	DVU3338	0.74	-0.3
3,513,731	-	kdpB	DVU3338	0.77	-1.8
3,513,804	+	kdpB	DVU3338	0.80	+0.2
3,513,861	+	kdpB	DVU3338	0.83	-0.0
3,513,861	+	kdpB	DVU3338	0.83	-0.5
3,513,869	-	kdpB	DVU3338	0.83	-0.8
3,513,892	-	kdpB	DVU3338	0.85	+0.4
3,513,925	+	kdpB	DVU3338	0.86	-0.6
3,513,992	+	kdpB	DVU3338	0.89	-0.9
3,514,003	+				+0.1
3,514,006	-				-0.2
3,514,020	+				+0.2
3,514,028	-				-0.5
3,514,074	-				-0.8
3,514,169	+				-0.7
3,514,177	-				+0.6
3,514,208	-				-0.3
3,514,222	-				+1.2
3,514,228	-				-0.2
3,514,244	+				-0.3
3,514,288	-				-0.6
3,514,332	+				+1.0
3,514,403	-	kdpA	DVU3339	0.11	-0.5
3,514,403	-	kdpA	DVU3339	0.11	+0.2
3,514,425	+	kdpA	DVU3339	0.12	-0.1
3,514,430	+	kdpA	DVU3339	0.12	-0.7
3,514,522	-	kdpA	DVU3339	0.18	-0.9
3,514,527	-	kdpA	DVU3339	0.18	-0.5
3,514,579	+	kdpA	DVU3339	0.21	-0.2
3,514,608	-	kdpA	DVU3339	0.23	-1.3
3,514,654	-	kdpA	DVU3339	0.25	-0.6
3,514,755	+	kdpA	DVU3339	0.31	-0.8
3,514,759	+	kdpA	DVU3339	0.31	+0.6
3,514,763	-	kdpA	DVU3339	0.32	-1.5
3,514,767	-	kdpA	DVU3339	0.32	-1.1
3,514,767	-	kdpA	DVU3339	0.32	-0.2
3,514,767	-	kdpA	DVU3339	0.32	-0.8
3,514,774	+	kdpA	DVU3339	0.32	+0.3
3,514,779	+	kdpA	DVU3339	0.33	-1.5
3,514,843	+	kdpA	DVU3339	0.36	-0.6
3,514,851	-	kdpA	DVU3339	0.37	+0.3
3,514,851	-	kdpA	DVU3339	0.37	-1.2
3,514,852	+	kdpA	DVU3339	0.37	-0.3
3,514,924	+	kdpA	DVU3339	0.41	-2.1
3,514,947	+	kdpA	DVU3339	0.42	-1.6
3,514,954	-	kdpA	DVU3339	0.43	+0.4
3,515,009	+	kdpA	DVU3339	0.46	-0.6
3,515,009	+	kdpA	DVU3339	0.46	+0.3
3,515,061	-	kdpA	DVU3339	0.49	-0.6
3,515,097	-	kdpA	DVU3339	0.51	-0.3
3,515,126	-	kdpA	DVU3339	0.53	+0.0
3,515,159	+	kdpA	DVU3339	0.55	-0.6
3,515,182	+	kdpA	DVU3339	0.56	-0.5
3,515,326	+	kdpA	DVU3339	0.65	-0.0
3,515,327	+	kdpA	DVU3339	0.65	+0.4
3,515,339	-	kdpA	DVU3339	0.65	-0.7
3,515,339	-	kdpA	DVU3339	0.65	-0.6
3,515,403	+	kdpA	DVU3339	0.69	-0.9
3,515,414	+	kdpA	DVU3339	0.70	-0.2
3,515,414	+	kdpA	DVU3339	0.70	-0.1
3,515,422	-	kdpA	DVU3339	0.70	-0.3
3,515,422	-	kdpA	DVU3339	0.70	+0.2
3,515,422	-	kdpA	DVU3339	0.70	+0.5
3,515,422	-	kdpA	DVU3339	0.70	+0.2
3,515,450	-	kdpA	DVU3339	0.72	+0.5
3,515,551	+	kdpA	DVU3339	0.78	-0.9
3,515,561	+	kdpA	DVU3339	0.78	-0.5
3,515,561	+	kdpA	DVU3339	0.78	-1.1
3,515,600	+	kdpA	DVU3339	0.81	-0.2
3,515,605	+	kdpA	DVU3339	0.81	-0.2
3,515,638	+	kdpA	DVU3339	0.83	+0.1
3,515,679	+	kdpA	DVU3339	0.85	-0.2
3,515,729	-	kdpA	DVU3339	0.88	+0.0
3,515,789	-				-0.5
3,515,793	+				-0.1
3,515,794	-				+0.1
3,515,801	-				-1.0
3,515,808	-				+0.4
3,515,810	+				-0.5
3,515,812	+				-0.3
3,515,829	-				+0.1
3,515,865	+				+1.6
3,515,865	+				-0.2
3,515,873	-				-2.2
3,515,873	-				-1.4
3,515,878	-				+1.0
3,515,897	-				+0.0
3,515,897	-				+0.8
3,515,956	-	kdpF	DVU3339.1	0.18	-0.9
3,515,958	+	kdpF	DVU3339.1	0.20	-0.3
3,515,988	-	kdpF	DVU3339.1	0.53	-1.1
3,516,031	+				-1.0
3,516,031	-				-0.2
3,516,066	+				+0.3
3,516,233	+				+0.3
3,516,241	-				-0.7
3,516,549	+				+0.1
3,516,549	+				-0.5
3,516,549	+				-1.1
3,516,549	+				-0.1
3,516,557	-				-0.9
3,516,557	-				+0.2
3,516,601	-				+0.4
3,516,669	+		DVU3342	0.23	+0.0
3,516,702	+		DVU3342	0.31	+0.4
3,516,720	+		DVU3342	0.35	-1.0
3,516,736	+		DVU3342	0.39	-0.5
3,516,745	+		DVU3342	0.41	+0.2
3,516,826	+		DVU3342	0.61	-0.2
3,516,848	-		DVU3342	0.66	-0.2
3,516,930	+		DVU3342	0.86	+1.5