Strain Fitness in Methanococcus maripaludis S2 around MMP_RS09055

Experiment: Mc formate, casamino free, with 10mM Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07395 and MMP_RS09050 are separated by 487 nucleotidesMMP_RS09050 and MMP_RS09055 are separated by 267 nucleotidesMMP_RS09055 and MMP_RS07405 are separated by 151 nucleotides MMP_RS07395: MMP_RS07395 - DNA topoisomerase IV subunit A, at 1,407,876 to 1,408,973 _RS07395 MMP_RS09050: MMP_RS09050 - CAP domain-containing protein, at 1,409,461 to 1,409,646 _RS09050 MMP_RS09055: MMP_RS09055 - CAP domain-containing protein, at 1,409,914 to 1,410,327 _RS09055 MMP_RS07405: MMP_RS07405 - 2 3-bisphosphoglycerate-independent phosphoglycerate mutase, at 1,410,479 to 1,411,699 _RS07405 Position (kb) 1409 1410 1411Strain fitness (log2 ratio) -3 -2 -1 0 1at 1408.994 kb on + strandat 1409.049 kb on + strandat 1409.331 kb on + strandat 1409.388 kb on - strandat 1409.388 kb on - strandat 1409.395 kb on - strandat 1409.395 kb on - strandat 1409.396 kb on + strandat 1409.447 kb on + strandat 1409.460 kb on - strandat 1409.485 kb on + strand, within MMP_RS09050at 1409.508 kb on - strand, within MMP_RS09050at 1409.532 kb on - strand, within MMP_RS09050at 1409.703 kb on - strandat 1409.777 kb on - strandat 1409.868 kb on + strandat 1409.895 kb on - strandat 1409.895 kb on - strandat 1409.896 kb on + strandat 1409.896 kb on + strandat 1409.896 kb on + strandat 1409.907 kb on - strandat 1409.907 kb on - strandat 1409.908 kb on + strandat 1409.908 kb on + strandat 1409.908 kb on + strandat 1409.911 kb on + strandat 1409.949 kb on + strandat 1409.949 kb on + strandat 1410.024 kb on + strand, within MMP_RS09055at 1410.298 kb on - strandat 1410.299 kb on + strandat 1410.299 kb on + strandat 1410.302 kb on + strandat 1410.343 kb on + strandat 1410.379 kb on + strandat 1410.479 kb on + strandat 1410.479 kb on + strandat 1410.501 kb on - strandat 1410.502 kb on + strandat 1410.788 kb on + strandat 1410.793 kb on + strandat 1411.131 kb on - strandat 1411.131 kb on - strandat 1411.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM Glycine
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1,408,994 + -0.6
1,409,049 + +0.6
1,409,331 + +0.3
1,409,388 - +0.5
1,409,388 - -1.2
1,409,395 - -1.8
1,409,395 - +0.2
1,409,396 + +0.3
1,409,447 + -0.5
1,409,460 - -0.1
1,409,485 + MMP_RS09050 0.13 +0.6
1,409,508 - MMP_RS09050 0.25 -0.1
1,409,532 - MMP_RS09050 0.38 -0.1
1,409,703 - +0.2
1,409,777 - +0.8
1,409,868 + +1.2
1,409,895 - -0.3
1,409,895 - -0.9
1,409,896 + -2.2
1,409,896 + +0.9
1,409,896 + +0.1
1,409,907 - +0.3
1,409,907 - -0.8
1,409,908 + +1.4
1,409,908 + -1.9
1,409,908 + -0.4
1,409,911 + -0.1
1,409,949 + +0.7
1,409,949 + -0.1
1,410,024 + MMP_RS09055 0.27 -1.7
1,410,298 - +1.7
1,410,299 + +0.9
1,410,299 + -1.0
1,410,302 + +1.1
1,410,343 + -0.4
1,410,379 + +0.5
1,410,479 + -2.9
1,410,479 + -1.2
1,410,501 - -1.2
1,410,502 + -0.5
1,410,788 + -2.2
1,410,793 + -1.3
1,411,131 - +1.3
1,411,131 - -1.1
1,411,131 - -0.1

Or see this region's nucleotide sequence