Experiment: Mc formate, casamino free, with 10mM Glycine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02600 and MMP_RS02605 overlap by 7 nucleotides MMP_RS02605 and MMP_RS02610 overlap by 1 nucleotides MMP_RS02610 and MMP_RS02615 are separated by 355 nucleotides
MMP_RS02600: MMP_RS02600 - DUF2149 domain-containing protein, at 487,189 to 487,527
_RS02600
MMP_RS02605: MMP_RS02605 - MotA/TolQ/ExbB proton channel family protein, at 487,521 to 488,162
_RS02605
MMP_RS02610: MMP_RS02610 - DUF2162 domain-containing protein, at 488,162 to 488,881
_RS02610
MMP_RS02615: MMP_RS02615 - cobaltochelatase subunit CobN, at 489,237 to 495,425
_RS02615
Position (kb) 488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 487.209 kb on - strand at 487.979 kb on - strand, within MMP_RS02605 at 488.214 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.278 kb on + strand, within MMP_RS02610 at 488.660 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.769 kb on + strand, within MMP_RS02610 at 488.921 kb on + strand at 489.039 kb on - strand at 489.095 kb on - strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.118 kb on + strand at 489.119 kb on - strand at 489.120 kb on + strand at 489.121 kb on - strand at 489.136 kb on + strand at 489.137 kb on - strand at 489.137 kb on - strand at 489.148 kb on - strand at 489.198 kb on - strand at 489.309 kb on + strand at 489.309 kb on + strand at 489.440 kb on - strand at 489.443 kb on - strand at 489.488 kb on - strand at 489.488 kb on - strand at 489.489 kb on + strand at 489.495 kb on + strand at 489.590 kb on - strand at 489.597 kb on + strand at 489.649 kb on - strand at 489.651 kb on - strand at 489.651 kb on - strand at 489.685 kb on + strand at 489.685 kb on + strand at 489.699 kb on - strand at 489.714 kb on + strand at 489.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM Glycine remove 487,209 - -1.0 487,979 - MMP_RS02605 0.71 -0.2 488,214 - +0.3 488,219 - -0.5 488,219 - -0.1 488,219 - +0.2 488,278 + MMP_RS02610 0.16 -1.3 488,660 - MMP_RS02610 0.69 -1.2 488,762 - MMP_RS02610 0.83 +0.0 488,762 - MMP_RS02610 0.83 -0.9 488,769 + MMP_RS02610 0.84 -0.4 488,921 + -0.3 489,039 - +1.3 489,095 - +0.4 489,115 + +0.0 489,115 + +0.5 489,115 + +0.4 489,118 + -0.9 489,119 - -0.5 489,120 + -1.7 489,121 - -0.8 489,136 + -0.3 489,137 - +0.1 489,137 - +0.4 489,148 - -0.3 489,198 - -0.4 489,309 + -1.7 489,309 + -0.1 489,440 - -2.3 489,443 - +0.6 489,488 - +0.6 489,488 - -1.2 489,489 + -0.9 489,495 + -0.5 489,590 - -0.6 489,597 + -2.2 489,649 - -3.0 489,651 - +0.3 489,651 - +0.0 489,685 + -1.3 489,685 + +0.9 489,699 - +0.2 489,714 + +0.2 489,843 - +0.2
Or see this region's nucleotide sequence