Strain Fitness in Marinobacter adhaerens HP15 around HP15_328

Experiment: m.b. Cholin acetate 153.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_326 and HP15_327 are separated by 28 nucleotidesHP15_327 and HP15_328 are separated by 469 nucleotidesHP15_328 and HP15_329 are separated by 7 nucleotides HP15_326: HP15_326 - polyA polymerase, at 322,195 to 323,526 _326 HP15_327: HP15_327 - hypothetical protein, at 323,555 to 323,764 _327 HP15_328: HP15_328 - two component, sigma54 specific, transcriptional regulator, Fis family, at 324,234 to 325,637 _328 HP15_329: HP15_329 - two-component sensor, at 325,645 to 328,608 _329 Position (kb) 324 325 326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 323.503 kb on - strandat 323.659 kb on - strand, within HP15_327at 323.789 kb on - strandat 324.122 kb on + strandat 325.142 kb on - strand, within HP15_328at 325.777 kb on - strandat 325.841 kb on - strandat 326.478 kb on + strand, within HP15_329

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 153.15 mM
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323,503 - -1.3
323,659 - HP15_327 0.50 -0.5
323,789 - -0.3
324,122 + -0.3
325,142 - HP15_328 0.65 -3.4
325,777 - +1.2
325,841 - +0.9
326,478 + HP15_329 0.28 -3.8

Or see this region's nucleotide sequence