Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3142

Experiment: MoLS4 minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3141 and DvMF_3142 are separated by 169 nucleotidesDvMF_3142 and DvMF_3143 are separated by 58 nucleotides DvMF_3141: DvMF_3141 - tRNA guanosine-2'-O-methyltransferase (RefSeq), at 3,961,647 to 3,962,210 _3141 DvMF_3142: DvMF_3142 - glycosyl transferase family 2 (RefSeq), at 3,962,380 to 3,963,672 _3142 DvMF_3143: DvMF_3143 - glycosyl transferase family 2 (RefSeq), at 3,963,731 to 3,965,530 _3143 Position (kb) 3962 3963 3964Strain fitness (log2 ratio) -1 0 1at 3961.566 kb on - strandat 3961.693 kb on + strandat 3961.779 kb on - strand, within DvMF_3141at 3961.789 kb on - strand, within DvMF_3141at 3962.067 kb on + strand, within DvMF_3141at 3962.467 kb on - strandat 3962.471 kb on + strandat 3962.486 kb on - strandat 3962.598 kb on + strand, within DvMF_3142at 3962.820 kb on + strand, within DvMF_3142at 3962.933 kb on + strand, within DvMF_3142at 3963.272 kb on - strand, within DvMF_3142at 3963.331 kb on - strand, within DvMF_3142at 3963.417 kb on - strand, within DvMF_3142at 3963.438 kb on + strand, within DvMF_3142at 3963.711 kb on - strandat 3963.718 kb on - strandat 3963.741 kb on - strandat 3963.822 kb on + strandat 3963.943 kb on - strand, within DvMF_3143at 3964.126 kb on + strand, within DvMF_3143at 3964.276 kb on - strand, within DvMF_3143at 3964.283 kb on + strand, within DvMF_3143at 3964.522 kb on - strand, within DvMF_3143at 3964.653 kb on + strand, within DvMF_3143at 3964.661 kb on - strand, within DvMF_3143

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
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3,961,566 - -0.2
3,961,693 + +0.5
3,961,779 - DvMF_3141 0.23 -0.2
3,961,789 - DvMF_3141 0.25 +0.1
3,962,067 + DvMF_3141 0.74 -0.3
3,962,467 - -0.7
3,962,471 + -0.6
3,962,486 - -0.9
3,962,598 + DvMF_3142 0.17 -0.6
3,962,820 + DvMF_3142 0.34 +1.7
3,962,933 + DvMF_3142 0.43 +0.0
3,963,272 - DvMF_3142 0.69 +0.5
3,963,331 - DvMF_3142 0.74 -0.4
3,963,417 - DvMF_3142 0.80 +0.7
3,963,438 + DvMF_3142 0.82 -0.6
3,963,711 - -0.1
3,963,718 - -0.5
3,963,741 - -0.4
3,963,822 + -0.0
3,963,943 - DvMF_3143 0.12 -0.4
3,964,126 + DvMF_3143 0.22 -0.1
3,964,276 - DvMF_3143 0.30 +0.0
3,964,283 + DvMF_3143 0.31 -0.4
3,964,522 - DvMF_3143 0.44 -0.7
3,964,653 + DvMF_3143 0.51 -1.2
3,964,661 - DvMF_3143 0.52 +0.2

Or see this region's nucleotide sequence