Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2865

Experiment: MoLS4 minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2864 and DvMF_2865 are separated by 64 nucleotidesDvMF_2865 and DvMF_2866 are separated by 303 nucleotides DvMF_2864: DvMF_2864 - cobyric acid synthase (RefSeq), at 3,616,839 to 3,618,494 _2864 DvMF_2865: DvMF_2865 - hypothetical protein (RefSeq), at 3,618,559 to 3,619,758 _2865 DvMF_2866: DvMF_2866 - hypothetical protein (RefSeq), at 3,620,062 to 3,620,499 _2866 Position (kb) 3618 3619 3620Strain fitness (log2 ratio) -1 0 1at 3618.220 kb on + strand, within DvMF_2864at 3618.483 kb on + strandat 3618.495 kb on - strandat 3618.804 kb on + strand, within DvMF_2865at 3618.962 kb on + strand, within DvMF_2865at 3619.053 kb on + strand, within DvMF_2865at 3619.324 kb on - strand, within DvMF_2865at 3619.483 kb on - strand, within DvMF_2865at 3619.516 kb on + strand, within DvMF_2865at 3619.529 kb on - strand, within DvMF_2865at 3619.567 kb on - strand, within DvMF_2865at 3620.136 kb on + strand, within DvMF_2866at 3620.136 kb on + strand, within DvMF_2866at 3620.259 kb on - strand, within DvMF_2866at 3620.400 kb on - strand, within DvMF_2866at 3620.492 kb on - strandat 3620.609 kb on - strandat 3620.682 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
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3,618,220 + DvMF_2864 0.83 -1.3
3,618,483 + -0.7
3,618,495 - -1.0
3,618,804 + DvMF_2865 0.20 -0.2
3,618,962 + DvMF_2865 0.34 -0.8
3,619,053 + DvMF_2865 0.41 -0.1
3,619,324 - DvMF_2865 0.64 -0.7
3,619,483 - DvMF_2865 0.77 +0.1
3,619,516 + DvMF_2865 0.80 +0.3
3,619,529 - DvMF_2865 0.81 -0.2
3,619,567 - DvMF_2865 0.84 -0.1
3,620,136 + DvMF_2866 0.17 -0.4
3,620,136 + DvMF_2866 0.17 -0.4
3,620,259 - DvMF_2866 0.45 -0.1
3,620,400 - DvMF_2866 0.77 -0.3
3,620,492 - -0.3
3,620,609 - -0.6
3,620,682 + -0.6

Or see this region's nucleotide sequence