Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2663

Experiment: MoLS4 minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2662 and DvMF_2663 are separated by 315 nucleotidesDvMF_2663 and DvMF_2664 are separated by 664 nucleotides DvMF_2662: DvMF_2662 - metal dependent phosphohydrolase (RefSeq), at 3,362,242 to 3,363,258 _2662 DvMF_2663: DvMF_2663 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,363,574 to 3,365,157 _2663 DvMF_2664: DvMF_2664 - PDZ/DHR/GLGF domain protein (RefSeq), at 3,365,822 to 3,367,024 _2664 Position (kb) 3363 3364 3365 3366Strain fitness (log2 ratio) -2 -1 0 1at 3362.585 kb on + strand, within DvMF_2662at 3362.598 kb on - strand, within DvMF_2662at 3362.653 kb on + strand, within DvMF_2662at 3362.722 kb on + strand, within DvMF_2662at 3362.723 kb on + strand, within DvMF_2662at 3362.723 kb on - strand, within DvMF_2662at 3362.723 kb on - strand, within DvMF_2662at 3362.741 kb on + strand, within DvMF_2662at 3362.749 kb on - strand, within DvMF_2662at 3362.776 kb on - strand, within DvMF_2662at 3363.047 kb on - strand, within DvMF_2662at 3363.349 kb on - strandat 3363.420 kb on + strandat 3363.420 kb on + strandat 3363.428 kb on - strandat 3363.452 kb on - strandat 3363.533 kb on - strandat 3363.601 kb on - strandat 3363.662 kb on - strandat 3363.715 kb on + strandat 3363.797 kb on - strand, within DvMF_2663at 3363.821 kb on - strand, within DvMF_2663at 3364.255 kb on - strand, within DvMF_2663at 3364.256 kb on + strand, within DvMF_2663at 3364.468 kb on - strand, within DvMF_2663at 3364.486 kb on + strand, within DvMF_2663at 3364.486 kb on + strand, within DvMF_2663at 3364.546 kb on - strand, within DvMF_2663at 3365.080 kb on - strandat 3365.152 kb on + strandat 3365.152 kb on + strandat 3365.236 kb on + strandat 3365.334 kb on - strandat 3365.334 kb on - strandat 3365.369 kb on - strandat 3365.435 kb on - strandat 3365.814 kb on + strandat 3366.051 kb on + strand, within DvMF_2664at 3366.057 kb on - strand, within DvMF_2664

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
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3,362,585 + DvMF_2662 0.34 -0.8
3,362,598 - DvMF_2662 0.35 +0.3
3,362,653 + DvMF_2662 0.40 -0.5
3,362,722 + DvMF_2662 0.47 -0.8
3,362,723 + DvMF_2662 0.47 -1.6
3,362,723 - DvMF_2662 0.47 -1.5
3,362,723 - DvMF_2662 0.47 -0.1
3,362,741 + DvMF_2662 0.49 -0.4
3,362,749 - DvMF_2662 0.50 -0.7
3,362,776 - DvMF_2662 0.53 -1.0
3,363,047 - DvMF_2662 0.79 -0.8
3,363,349 - -1.0
3,363,420 + -0.4
3,363,420 + -0.1
3,363,428 - +0.3
3,363,452 - -1.5
3,363,533 - +0.0
3,363,601 - -0.0
3,363,662 - -0.8
3,363,715 + +0.0
3,363,797 - DvMF_2663 0.14 -1.2
3,363,821 - DvMF_2663 0.16 -1.6
3,364,255 - DvMF_2663 0.43 -0.7
3,364,256 + DvMF_2663 0.43 -1.2
3,364,468 - DvMF_2663 0.56 -0.1
3,364,486 + DvMF_2663 0.58 -0.6
3,364,486 + DvMF_2663 0.58 -1.2
3,364,546 - DvMF_2663 0.61 -0.7
3,365,080 - -2.7
3,365,152 + -0.4
3,365,152 + +0.0
3,365,236 + -0.8
3,365,334 - -0.8
3,365,334 - -0.9
3,365,369 - -0.5
3,365,435 - -0.8
3,365,814 + -0.5
3,366,051 + DvMF_2664 0.19 -1.0
3,366,057 - DvMF_2664 0.20 -0.2

Or see this region's nucleotide sequence