Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2551

Experiment: MoLS4 minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2550 and DvMF_2551 are separated by 273 nucleotidesDvMF_2551 and DvMF_2552 are separated by 115 nucleotides DvMF_2550: DvMF_2550 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,223,559 to 3,225,616 _2550 DvMF_2551: DvMF_2551 - response regulator receiver protein (RefSeq), at 3,225,890 to 3,226,858 _2551 DvMF_2552: DvMF_2552 - UspA domain protein (RefSeq), at 3,226,974 to 3,227,891 _2552 Position (kb) 3225 3226 3227Strain fitness (log2 ratio) -1 0 1at 3224.898 kb on - strand, within DvMF_2550at 3225.051 kb on - strand, within DvMF_2550at 3225.440 kb on - strandat 3225.568 kb on - strandat 3225.900 kb on + strandat 3225.929 kb on - strandat 3225.962 kb on - strandat 3226.002 kb on + strand, within DvMF_2551at 3226.245 kb on + strand, within DvMF_2551at 3226.266 kb on + strand, within DvMF_2551at 3226.372 kb on + strand, within DvMF_2551at 3226.382 kb on + strand, within DvMF_2551at 3226.650 kb on - strand, within DvMF_2551at 3226.650 kb on - strand, within DvMF_2551at 3226.717 kb on + strand, within DvMF_2551at 3226.768 kb on - strandat 3226.859 kb on + strandat 3226.926 kb on + strandat 3227.273 kb on + strand, within DvMF_2552at 3227.288 kb on + strand, within DvMF_2552at 3227.310 kb on - strand, within DvMF_2552at 3227.463 kb on + strand, within DvMF_2552at 3227.471 kb on - strand, within DvMF_2552at 3227.603 kb on - strand, within DvMF_2552at 3227.603 kb on - strand, within DvMF_2552at 3227.788 kb on + strand, within DvMF_2552

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
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3,224,898 - DvMF_2550 0.65 -0.5
3,225,051 - DvMF_2550 0.72 -0.9
3,225,440 - +0.4
3,225,568 - -0.4
3,225,900 + -0.1
3,225,929 - -0.6
3,225,962 - +0.5
3,226,002 + DvMF_2551 0.12 -1.0
3,226,245 + DvMF_2551 0.37 -0.7
3,226,266 + DvMF_2551 0.39 +0.4
3,226,372 + DvMF_2551 0.50 -0.5
3,226,382 + DvMF_2551 0.51 -0.1
3,226,650 - DvMF_2551 0.78 -0.7
3,226,650 - DvMF_2551 0.78 +0.2
3,226,717 + DvMF_2551 0.85 +0.5
3,226,768 - -0.7
3,226,859 + +0.9
3,226,926 + -0.9
3,227,273 + DvMF_2552 0.33 -0.8
3,227,288 + DvMF_2552 0.34 -0.3
3,227,310 - DvMF_2552 0.37 -0.5
3,227,463 + DvMF_2552 0.53 -1.0
3,227,471 - DvMF_2552 0.54 -0.5
3,227,603 - DvMF_2552 0.69 -0.8
3,227,603 - DvMF_2552 0.69 -1.2
3,227,788 + DvMF_2552 0.89 -0.5

Or see this region's nucleotide sequence