Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2403

Experiment: MoLS4 minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2402 and DvMF_2403 are separated by 598 nucleotidesDvMF_2403 and DvMF_2404 are separated by 131 nucleotides DvMF_2402: DvMF_2402 - nickel ABC transporter, periplasmic nickel-binding protein (RefSeq), at 3,035,450 to 3,037,066 _2402 DvMF_2403: DvMF_2403 - TOBE domain protein (RefSeq), at 3,037,665 to 3,037,874 _2403 DvMF_2404: DvMF_2404 - protein of unknown function DUF1105 (RefSeq), at 3,038,006 to 3,038,593 _2404 Position (kb) 3037 3038Strain fitness (log2 ratio) -1 0 1at 3037.012 kb on + strandat 3037.475 kb on + strandat 3037.564 kb on - strandat 3037.671 kb on - strandat 3037.686 kb on - strand, within DvMF_2403at 3037.770 kb on + strand, within DvMF_2403at 3037.802 kb on - strand, within DvMF_2403at 3038.028 kb on - strandat 3038.028 kb on - strandat 3038.078 kb on - strand, within DvMF_2404at 3038.135 kb on + strand, within DvMF_2404at 3038.135 kb on + strand, within DvMF_2404at 3038.166 kb on - strand, within DvMF_2404at 3038.210 kb on + strand, within DvMF_2404at 3038.427 kb on + strand, within DvMF_2404at 3038.435 kb on - strand, within DvMF_2404

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
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3,037,012 + +0.2
3,037,475 + -1.5
3,037,564 - -0.9
3,037,671 - -0.6
3,037,686 - DvMF_2403 0.10 -0.2
3,037,770 + DvMF_2403 0.50 -0.6
3,037,802 - DvMF_2403 0.65 +0.3
3,038,028 - -0.4
3,038,028 - -0.9
3,038,078 - DvMF_2404 0.12 -0.9
3,038,135 + DvMF_2404 0.22 -0.8
3,038,135 + DvMF_2404 0.22 -0.0
3,038,166 - DvMF_2404 0.27 -0.0
3,038,210 + DvMF_2404 0.35 -0.4
3,038,427 + DvMF_2404 0.72 -0.2
3,038,435 - DvMF_2404 0.73 -0.5

Or see this region's nucleotide sequence