Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2174

Experiment: MoLS4 minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2172 and DvMF_2173 are separated by 368 nucleotidesDvMF_2173 and DvMF_2174 are separated by 24 nucleotidesDvMF_2174 and DvMF_2175 are separated by 299 nucleotides DvMF_2172: DvMF_2172 - DSBA oxidoreductase (RefSeq), at 2,709,762 to 2,710,565 _2172 DvMF_2173: DvMF_2173 - branched-chain amino acid transport (RefSeq), at 2,710,934 to 2,711,260 _2173 DvMF_2174: DvMF_2174 - AzlC family protein (RefSeq), at 2,711,285 to 2,712,133 _2174 DvMF_2175: DvMF_2175 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,712,433 to 2,713,929 _2175 Position (kb) 2711 2712 2713Strain fitness (log2 ratio) -1 0 1at 2710.417 kb on + strand, within DvMF_2172at 2710.524 kb on + strandat 2710.790 kb on - strandat 2710.886 kb on - strandat 2711.284 kb on + strandat 2711.290 kb on + strandat 2711.409 kb on + strand, within DvMF_2174at 2711.417 kb on - strand, within DvMF_2174at 2711.417 kb on - strand, within DvMF_2174at 2711.417 kb on - strand, within DvMF_2174at 2711.470 kb on + strand, within DvMF_2174at 2711.621 kb on - strand, within DvMF_2174at 2711.806 kb on + strand, within DvMF_2174at 2711.960 kb on + strand, within DvMF_2174at 2712.061 kb on - strandat 2712.293 kb on - strandat 2712.341 kb on - strandat 2712.375 kb on + strandat 2712.602 kb on - strand, within DvMF_2175at 2712.610 kb on - strand, within DvMF_2175at 2712.724 kb on + strand, within DvMF_2175at 2712.775 kb on + strand, within DvMF_2175at 2712.825 kb on - strand, within DvMF_2175at 2712.995 kb on + strand, within DvMF_2175at 2713.028 kb on + strand, within DvMF_2175at 2713.059 kb on - strand, within DvMF_2175at 2713.059 kb on - strand, within DvMF_2175at 2713.095 kb on + strand, within DvMF_2175

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
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2,710,417 + DvMF_2172 0.81 -1.0
2,710,524 + -1.5
2,710,790 - +0.0
2,710,886 - -0.7
2,711,284 + -0.8
2,711,290 + -0.6
2,711,409 + DvMF_2174 0.15 -1.1
2,711,417 - DvMF_2174 0.16 -0.3
2,711,417 - DvMF_2174 0.16 -0.8
2,711,417 - DvMF_2174 0.16 -0.9
2,711,470 + DvMF_2174 0.22 -1.4
2,711,621 - DvMF_2174 0.40 -0.8
2,711,806 + DvMF_2174 0.61 -1.2
2,711,960 + DvMF_2174 0.80 -0.1
2,712,061 - -0.8
2,712,293 - -0.7
2,712,341 - +0.6
2,712,375 + -0.8
2,712,602 - DvMF_2175 0.11 -0.7
2,712,610 - DvMF_2175 0.12 -0.4
2,712,724 + DvMF_2175 0.19 -0.8
2,712,775 + DvMF_2175 0.23 -0.2
2,712,825 - DvMF_2175 0.26 -1.2
2,712,995 + DvMF_2175 0.38 -1.5
2,713,028 + DvMF_2175 0.40 -0.7
2,713,059 - DvMF_2175 0.42 -0.1
2,713,059 - DvMF_2175 0.42 -0.9
2,713,095 + DvMF_2175 0.44 -1.2

Or see this region's nucleotide sequence