Experiment: MoLS4 minimal media with L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2172 and DvMF_2173 are separated by 368 nucleotides DvMF_2173 and DvMF_2174 are separated by 24 nucleotides DvMF_2174 and DvMF_2175 are separated by 299 nucleotides
DvMF_2172: DvMF_2172 - DSBA oxidoreductase (RefSeq), at 2,709,762 to 2,710,565
_2172
DvMF_2173: DvMF_2173 - branched-chain amino acid transport (RefSeq), at 2,710,934 to 2,711,260
_2173
DvMF_2174: DvMF_2174 - AzlC family protein (RefSeq), at 2,711,285 to 2,712,133
_2174
DvMF_2175: DvMF_2175 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,712,433 to 2,713,929
_2175
Position (kb)
2711
2712
2713 Strain fitness (log2 ratio)
-1
0
1 at 2710.417 kb on + strand, within DvMF_2172 at 2710.524 kb on + strand at 2710.790 kb on - strand at 2710.886 kb on - strand at 2711.284 kb on + strand at 2711.290 kb on + strand at 2711.409 kb on + strand, within DvMF_2174 at 2711.417 kb on - strand, within DvMF_2174 at 2711.417 kb on - strand, within DvMF_2174 at 2711.417 kb on - strand, within DvMF_2174 at 2711.470 kb on + strand, within DvMF_2174 at 2711.621 kb on - strand, within DvMF_2174 at 2711.806 kb on + strand, within DvMF_2174 at 2711.960 kb on + strand, within DvMF_2174 at 2712.061 kb on - strand at 2712.293 kb on - strand at 2712.341 kb on - strand at 2712.375 kb on + strand at 2712.602 kb on - strand, within DvMF_2175 at 2712.610 kb on - strand, within DvMF_2175 at 2712.724 kb on + strand, within DvMF_2175 at 2712.775 kb on + strand, within DvMF_2175 at 2712.825 kb on - strand, within DvMF_2175 at 2712.995 kb on + strand, within DvMF_2175 at 2713.028 kb on + strand, within DvMF_2175 at 2713.059 kb on - strand, within DvMF_2175 at 2713.059 kb on - strand, within DvMF_2175 at 2713.095 kb on + strand, within DvMF_2175
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine remove 2,710,417 + DvMF_2172 0.81 -1.0 2,710,524 + -1.5 2,710,790 - +0.0 2,710,886 - -0.7 2,711,284 + -0.8 2,711,290 + -0.6 2,711,409 + DvMF_2174 0.15 -1.1 2,711,417 - DvMF_2174 0.16 -0.3 2,711,417 - DvMF_2174 0.16 -0.8 2,711,417 - DvMF_2174 0.16 -0.9 2,711,470 + DvMF_2174 0.22 -1.4 2,711,621 - DvMF_2174 0.40 -0.8 2,711,806 + DvMF_2174 0.61 -1.2 2,711,960 + DvMF_2174 0.80 -0.1 2,712,061 - -0.8 2,712,293 - -0.7 2,712,341 - +0.6 2,712,375 + -0.8 2,712,602 - DvMF_2175 0.11 -0.7 2,712,610 - DvMF_2175 0.12 -0.4 2,712,724 + DvMF_2175 0.19 -0.8 2,712,775 + DvMF_2175 0.23 -0.2 2,712,825 - DvMF_2175 0.26 -1.2 2,712,995 + DvMF_2175 0.38 -1.5 2,713,028 + DvMF_2175 0.40 -0.7 2,713,059 - DvMF_2175 0.42 -0.1 2,713,059 - DvMF_2175 0.42 -0.9 2,713,095 + DvMF_2175 0.44 -1.2
Or see this region's nucleotide sequence