Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1284

Experiment: MoLS4 minimal media with L-Histidine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1283 and DvMF_1284 are separated by 944 nucleotidesDvMF_1284 and DvMF_1285 are separated by 1 nucleotides DvMF_1283: DvMF_1283 - hypothetical protein (RefSeq), at 1,572,739 to 1,573,671 _1283 DvMF_1284: DvMF_1284 - protein of unknown function DUF935 (RefSeq), at 1,574,616 to 1,576,190 _1284 DvMF_1285: DvMF_1285 - phage head morphogenesis protein, SPP1 gp7 family (RefSeq), at 1,576,192 to 1,577,493 _1285 Position (kb) 1574 1575 1576 1577Strain fitness (log2 ratio) -1 0 1at 1573.765 kb on + strandat 1574.221 kb on + strandat 1574.287 kb on + strandat 1574.700 kb on - strandat 1574.899 kb on + strand, within DvMF_1284at 1574.977 kb on - strand, within DvMF_1284at 1575.389 kb on - strand, within DvMF_1284at 1575.389 kb on - strand, within DvMF_1284at 1575.467 kb on + strand, within DvMF_1284at 1575.665 kb on + strand, within DvMF_1284at 1575.730 kb on + strand, within DvMF_1284at 1575.760 kb on - strand, within DvMF_1284at 1575.814 kb on - strand, within DvMF_1284at 1575.869 kb on + strand, within DvMF_1284at 1576.082 kb on + strandat 1576.157 kb on - strandat 1576.157 kb on - strandat 1576.267 kb on + strandat 1576.293 kb on + strandat 1576.549 kb on + strand, within DvMF_1285at 1576.549 kb on + strand, within DvMF_1285at 1576.549 kb on + strand, within DvMF_1285at 1576.613 kb on - strand, within DvMF_1285at 1576.615 kb on + strand, within DvMF_1285at 1576.771 kb on - strand, within DvMF_1285at 1576.857 kb on - strand, within DvMF_1285at 1576.978 kb on + strand, within DvMF_1285at 1577.042 kb on + strand, within DvMF_1285at 1577.050 kb on - strand, within DvMF_1285at 1577.095 kb on - strand, within DvMF_1285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
remove
1,573,765 + -0.2
1,574,221 + -0.1
1,574,287 + -0.4
1,574,700 - -0.4
1,574,899 + DvMF_1284 0.18 +1.2
1,574,977 - DvMF_1284 0.23 -0.0
1,575,389 - DvMF_1284 0.49 +0.1
1,575,389 - DvMF_1284 0.49 -0.7
1,575,467 + DvMF_1284 0.54 +0.3
1,575,665 + DvMF_1284 0.67 +0.1
1,575,730 + DvMF_1284 0.71 -0.2
1,575,760 - DvMF_1284 0.73 -0.6
1,575,814 - DvMF_1284 0.76 +0.4
1,575,869 + DvMF_1284 0.80 +0.2
1,576,082 + -0.1
1,576,157 - -0.5
1,576,157 - -0.1
1,576,267 + -0.1
1,576,293 + +0.5
1,576,549 + DvMF_1285 0.27 +1.2
1,576,549 + DvMF_1285 0.27 -0.3
1,576,549 + DvMF_1285 0.27 -0.6
1,576,613 - DvMF_1285 0.32 -0.3
1,576,615 + DvMF_1285 0.32 +0.1
1,576,771 - DvMF_1285 0.44 -0.2
1,576,857 - DvMF_1285 0.51 -0.5
1,576,978 + DvMF_1285 0.60 -0.1
1,577,042 + DvMF_1285 0.65 +0.1
1,577,050 - DvMF_1285 0.66 -0.4
1,577,095 - DvMF_1285 0.69 +0.1

Or see this region's nucleotide sequence