Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1136

Experiment: MoLS4 minimal media with L-Histidine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1135 and DvMF_1136 overlap by 4 nucleotidesDvMF_1136 and DvMF_1137 are separated by 226 nucleotidesDvMF_1137 and DvMF_1138 are separated by 5 nucleotides DvMF_1135: DvMF_1135 - metal dependent phosphohydrolase (RefSeq), at 1,393,458 to 1,394,480 _1135 DvMF_1136: DvMF_1136 - Tetratricopeptide domain protein (RefSeq), at 1,394,477 to 1,395,385 _1136 DvMF_1137: DvMF_1137 - orotidine 5'-phosphate decarboxylase (RefSeq), at 1,395,612 to 1,396,364 _1137 DvMF_1138: DvMF_1138 - Guanylate kinase (RefSeq), at 1,396,370 to 1,396,999 _1138 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1393.571 kb on - strand, within DvMF_1135at 1393.636 kb on + strand, within DvMF_1135at 1394.149 kb on - strand, within DvMF_1135at 1394.219 kb on - strand, within DvMF_1135at 1394.305 kb on - strand, within DvMF_1135at 1394.328 kb on + strand, within DvMF_1135at 1394.439 kb on + strandat 1394.439 kb on + strandat 1394.537 kb on + strandat 1394.537 kb on + strandat 1394.545 kb on - strandat 1394.545 kb on - strandat 1394.581 kb on + strand, within DvMF_1136at 1394.748 kb on - strand, within DvMF_1136at 1394.949 kb on - strand, within DvMF_1136at 1395.025 kb on + strand, within DvMF_1136at 1395.214 kb on - strand, within DvMF_1136at 1395.552 kb on + strandat 1395.689 kb on - strand, within DvMF_1137at 1395.777 kb on + strand, within DvMF_1137at 1395.846 kb on + strand, within DvMF_1137at 1396.012 kb on - strand, within DvMF_1137at 1396.012 kb on - strand, within DvMF_1137at 1396.216 kb on - strand, within DvMF_1137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
remove
1,393,571 - DvMF_1135 0.11 -0.4
1,393,636 + DvMF_1135 0.17 -1.8
1,394,149 - DvMF_1135 0.68 +0.3
1,394,219 - DvMF_1135 0.74 +0.1
1,394,305 - DvMF_1135 0.83 -0.7
1,394,328 + DvMF_1135 0.85 -0.4
1,394,439 + -1.2
1,394,439 + -0.4
1,394,537 + +0.1
1,394,537 + -0.5
1,394,545 - -0.2
1,394,545 - -0.4
1,394,581 + DvMF_1136 0.11 -0.4
1,394,748 - DvMF_1136 0.30 -0.4
1,394,949 - DvMF_1136 0.52 -0.1
1,395,025 + DvMF_1136 0.60 -0.1
1,395,214 - DvMF_1136 0.81 -1.5
1,395,552 + -0.7
1,395,689 - DvMF_1137 0.10 -4.8
1,395,777 + DvMF_1137 0.22 -3.0
1,395,846 + DvMF_1137 0.31 -2.2
1,396,012 - DvMF_1137 0.53 -3.6
1,396,012 - DvMF_1137 0.53 -2.4
1,396,216 - DvMF_1137 0.80 -4.2

Or see this region's nucleotide sequence