Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0316

Experiment: MoLS4 minimal media with L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0315 and DvMF_0316 are separated by 2 nucleotidesDvMF_0316 and DvMF_0317 are separated by 20 nucleotides DvMF_0315: DvMF_0315 - SSS sodium solute transporter superfamily (RefSeq), at 364,392 to 365,951 _0315 DvMF_0316: DvMF_0316 - putative signal transduction protein with CBS domains (RefSeq), at 365,954 to 367,684 _0316 DvMF_0317: DvMF_0317 - putative signal transduction protein with CBS domains (RefSeq), at 367,705 to 369,897 _0317 Position (kb) 365 366 367 368Strain fitness (log2 ratio) -2 -1 0 1at 364.969 kb on - strand, within DvMF_0315at 365.228 kb on - strand, within DvMF_0315at 365.464 kb on + strand, within DvMF_0315at 365.464 kb on + strand, within DvMF_0315at 365.501 kb on + strand, within DvMF_0315at 365.550 kb on - strand, within DvMF_0315at 365.576 kb on - strand, within DvMF_0315at 365.657 kb on + strand, within DvMF_0315at 365.657 kb on + strand, within DvMF_0315at 365.665 kb on - strand, within DvMF_0315at 365.874 kb on - strandat 365.895 kb on + strandat 365.954 kb on - strandat 366.075 kb on + strandat 366.083 kb on - strandat 366.196 kb on + strand, within DvMF_0316at 366.320 kb on - strand, within DvMF_0316at 366.444 kb on + strand, within DvMF_0316at 366.569 kb on + strand, within DvMF_0316at 366.677 kb on - strand, within DvMF_0316at 366.981 kb on + strand, within DvMF_0316at 366.989 kb on - strand, within DvMF_0316at 367.173 kb on - strand, within DvMF_0316at 367.266 kb on - strand, within DvMF_0316at 367.528 kb on + strandat 367.537 kb on + strandat 367.853 kb on - strandat 367.853 kb on - strandat 367.954 kb on + strand, within DvMF_0317at 367.962 kb on - strand, within DvMF_0317at 367.968 kb on + strand, within DvMF_0317at 367.977 kb on + strand, within DvMF_0317at 367.985 kb on - strand, within DvMF_0317at 368.047 kb on - strand, within DvMF_0317at 368.052 kb on + strand, within DvMF_0317at 368.102 kb on - strand, within DvMF_0317at 368.107 kb on - strand, within DvMF_0317at 368.183 kb on - strand, within DvMF_0317at 368.300 kb on + strand, within DvMF_0317at 368.300 kb on - strand, within DvMF_0317at 368.308 kb on - strand, within DvMF_0317at 368.397 kb on - strand, within DvMF_0317at 368.465 kb on - strand, within DvMF_0317at 368.495 kb on - strand, within DvMF_0317at 368.553 kb on + strand, within DvMF_0317at 368.640 kb on + strand, within DvMF_0317at 368.648 kb on - strand, within DvMF_0317

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Histidine
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364,969 - DvMF_0315 0.37 -0.8
365,228 - DvMF_0315 0.54 -0.4
365,464 + DvMF_0315 0.69 -0.0
365,464 + DvMF_0315 0.69 -0.6
365,501 + DvMF_0315 0.71 +0.5
365,550 - DvMF_0315 0.74 -0.8
365,576 - DvMF_0315 0.76 -0.6
365,657 + DvMF_0315 0.81 -1.7
365,657 + DvMF_0315 0.81 -0.5
365,665 - DvMF_0315 0.82 -0.1
365,874 - -0.8
365,895 + -0.3
365,954 - -0.6
366,075 + -1.1
366,083 - -1.1
366,196 + DvMF_0316 0.14 +0.1
366,320 - DvMF_0316 0.21 +0.1
366,444 + DvMF_0316 0.28 -0.2
366,569 + DvMF_0316 0.36 -0.3
366,677 - DvMF_0316 0.42 +0.5
366,981 + DvMF_0316 0.59 -1.7
366,989 - DvMF_0316 0.60 +1.0
367,173 - DvMF_0316 0.70 +0.0
367,266 - DvMF_0316 0.76 -0.7
367,528 + -0.3
367,537 + +0.9
367,853 - -0.5
367,853 - +0.1
367,954 + DvMF_0317 0.11 -0.7
367,962 - DvMF_0317 0.12 -0.3
367,968 + DvMF_0317 0.12 +0.3
367,977 + DvMF_0317 0.12 -2.4
367,985 - DvMF_0317 0.13 -0.4
368,047 - DvMF_0317 0.16 -0.8
368,052 + DvMF_0317 0.16 -0.1
368,102 - DvMF_0317 0.18 -1.9
368,107 - DvMF_0317 0.18 -0.4
368,183 - DvMF_0317 0.22 -0.6
368,300 + DvMF_0317 0.27 -0.6
368,300 - DvMF_0317 0.27 +0.3
368,308 - DvMF_0317 0.27 +0.1
368,397 - DvMF_0317 0.32 -0.6
368,465 - DvMF_0317 0.35 -0.8
368,495 - DvMF_0317 0.36 -0.3
368,553 + DvMF_0317 0.39 -0.6
368,640 + DvMF_0317 0.43 -0.2
368,648 - DvMF_0317 0.43 -0.3

Or see this region's nucleotide sequence