Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2177

Experiment: Pyruvate (fermenting) with Na2S as sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2175 and DVU2176 are separated by 76 nucleotidesDVU2176 and DVU2177 are separated by 349 nucleotidesDVU2177 and DVU2178 are separated by 325 nucleotides DVU2175: DVU2175 - adenine specific DNA methyltransferase, putative (TIGR), at 2,270,961 to 2,275,748 DVU2175 DVU2176: DVU2176 - hypothetical protein (TIGR), at 2,275,825 to 2,276,004 DVU2176 DVU2177: DVU2177 - hypothetical protein (TIGR), at 2,276,354 to 2,277,667 DVU2177 DVU2178: DVU2178 - ISDvu2, transposase OrfB (TIGR), at 2,277,993 to 2,278,835 DVU2178 Position (kb) 2276 2277 2278Strain fitness (log2 ratio) -2 -1 0 1at 2275.381 kb on - strandat 2275.430 kb on + strandat 2275.465 kb on + strandat 2275.553 kb on + strandat 2275.600 kb on + strandat 2275.614 kb on + strandat 2275.622 kb on - strandat 2275.636 kb on + strandat 2275.662 kb on - strandat 2275.725 kb on + strandat 2275.725 kb on + strandat 2275.733 kb on - strandat 2275.883 kb on - strand, within DVU2176at 2276.184 kb on - strandat 2276.406 kb on + strandat 2276.620 kb on + strand, within DVU2177at 2278.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source
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2,275,381 - -0.7
2,275,430 + -0.1
2,275,465 + -0.4
2,275,553 + -0.2
2,275,600 + -0.6
2,275,614 + +0.1
2,275,622 - -0.2
2,275,636 + -0.2
2,275,662 - -1.9
2,275,725 + -0.0
2,275,725 + -0.9
2,275,733 - -1.0
2,275,883 - DVU2176 0.32 -0.6
2,276,184 - -0.4
2,276,406 + -0.6
2,276,620 + DVU2177 0.20 +0.3
2,278,005 - -1.1

Or see this region's nucleotide sequence