Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4219.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4217.1 and Xcc-8004.4219.1 are separated by 228 nucleotidesXcc-8004.4219.1 and Xcc-8004.4220.1 are separated by 174 nucleotides Xcc-8004.4217.1: Xcc-8004.4217.1 - FIG01209968: hypothetical protein, at 4,044,574 to 4,045,359 Xcc-8004.4217.1 Xcc-8004.4219.1: Xcc-8004.4219.1 - Proline iminopeptidase (EC 3.4.11.5), at 4,045,588 to 4,046,529 Xcc-8004.4219.1 Xcc-8004.4220.1: Xcc-8004.4220.1 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 4,046,704 to 4,047,534 Xcc-8004.4220.1 Position (kb) 4045 4046 4047Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4044.741 kb on + strand, within Xcc-8004.4217.1at 4044.742 kb on - strand, within Xcc-8004.4217.1at 4044.742 kb on - strand, within Xcc-8004.4217.1at 4044.820 kb on + strand, within Xcc-8004.4217.1at 4044.820 kb on + strand, within Xcc-8004.4217.1at 4044.820 kb on + strand, within Xcc-8004.4217.1at 4044.820 kb on + strand, within Xcc-8004.4217.1at 4044.821 kb on - strand, within Xcc-8004.4217.1at 4044.821 kb on - strand, within Xcc-8004.4217.1at 4044.821 kb on - strand, within Xcc-8004.4217.1at 4044.821 kb on - strand, within Xcc-8004.4217.1at 4044.821 kb on - strand, within Xcc-8004.4217.1at 4044.821 kb on - strand, within Xcc-8004.4217.1at 4044.821 kb on - strand, within Xcc-8004.4217.1at 4044.942 kb on + strand, within Xcc-8004.4217.1at 4044.942 kb on + strand, within Xcc-8004.4217.1at 4044.942 kb on + strand, within Xcc-8004.4217.1at 4044.942 kb on + strand, within Xcc-8004.4217.1at 4044.942 kb on + strand, within Xcc-8004.4217.1at 4044.943 kb on - strand, within Xcc-8004.4217.1at 4044.943 kb on - strand, within Xcc-8004.4217.1at 4044.965 kb on - strand, within Xcc-8004.4217.1at 4045.093 kb on + strand, within Xcc-8004.4217.1at 4045.093 kb on + strand, within Xcc-8004.4217.1at 4045.093 kb on + strand, within Xcc-8004.4217.1at 4045.093 kb on + strand, within Xcc-8004.4217.1at 4045.094 kb on - strand, within Xcc-8004.4217.1at 4045.094 kb on - strand, within Xcc-8004.4217.1at 4045.094 kb on - strand, within Xcc-8004.4217.1at 4045.094 kb on - strand, within Xcc-8004.4217.1at 4045.094 kb on - strand, within Xcc-8004.4217.1at 4045.094 kb on - strand, within Xcc-8004.4217.1at 4045.177 kb on + strand, within Xcc-8004.4217.1at 4045.177 kb on + strand, within Xcc-8004.4217.1at 4045.177 kb on + strand, within Xcc-8004.4217.1at 4045.177 kb on + strand, within Xcc-8004.4217.1at 4045.178 kb on - strand, within Xcc-8004.4217.1at 4045.178 kb on - strand, within Xcc-8004.4217.1at 4045.178 kb on - strand, within Xcc-8004.4217.1at 4045.178 kb on - strand, within Xcc-8004.4217.1at 4045.201 kb on + strand, within Xcc-8004.4217.1at 4045.201 kb on + strand, within Xcc-8004.4217.1at 4045.202 kb on - strand, within Xcc-8004.4217.1at 4045.216 kb on + strand, within Xcc-8004.4217.1at 4045.357 kb on + strandat 4045.407 kb on - strandat 4045.422 kb on - strandat 4045.422 kb on - strandat 4045.422 kb on - strandat 4045.422 kb on - strandat 4045.422 kb on - strandat 4045.422 kb on - strandat 4045.422 kb on - strandat 4045.426 kb on - strandat 4045.426 kb on - strandat 4045.426 kb on - strandat 4045.447 kb on - strandat 4045.478 kb on + strandat 4045.478 kb on + strandat 4045.515 kb on - strandat 4045.515 kb on - strandat 4045.515 kb on - strandat 4045.515 kb on - strandat 4045.515 kb on - strandat 4045.536 kb on - strandat 4045.536 kb on - strandat 4045.536 kb on - strandat 4045.540 kb on - strandat 4045.540 kb on - strandat 4045.540 kb on - strandat 4045.736 kb on + strand, within Xcc-8004.4219.1at 4045.736 kb on + strand, within Xcc-8004.4219.1at 4045.737 kb on - strand, within Xcc-8004.4219.1at 4045.737 kb on - strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.845 kb on + strand, within Xcc-8004.4219.1at 4045.846 kb on - strand, within Xcc-8004.4219.1at 4045.846 kb on - strand, within Xcc-8004.4219.1at 4045.846 kb on - strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.091 kb on - strand, within Xcc-8004.4219.1at 4046.174 kb on + strand, within Xcc-8004.4219.1at 4046.175 kb on - strand, within Xcc-8004.4219.1at 4046.175 kb on - strand, within Xcc-8004.4219.1at 4046.348 kb on + strand, within Xcc-8004.4219.1at 4046.348 kb on + strand, within Xcc-8004.4219.1at 4046.349 kb on - strand, within Xcc-8004.4219.1at 4046.349 kb on - strand, within Xcc-8004.4219.1at 4046.382 kb on + strand, within Xcc-8004.4219.1at 4046.382 kb on + strand, within Xcc-8004.4219.1at 4046.383 kb on - strand, within Xcc-8004.4219.1at 4046.383 kb on - strand, within Xcc-8004.4219.1at 4046.456 kb on + strandat 4046.457 kb on - strandat 4046.457 kb on - strandat 4046.457 kb on - strandat 4046.516 kb on + strandat 4046.559 kb on + strandat 4046.559 kb on + strandat 4046.559 kb on + strandat 4046.559 kb on + strandat 4046.560 kb on - strandat 4046.560 kb on - strandat 4046.560 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
remove
4,044,741 + Xcc-8004.4217.1 0.21 -2.3
4,044,742 - Xcc-8004.4217.1 0.21 +0.2
4,044,742 - Xcc-8004.4217.1 0.21 -0.2
4,044,820 + Xcc-8004.4217.1 0.31 -0.6
4,044,820 + Xcc-8004.4217.1 0.31 +0.6
4,044,820 + Xcc-8004.4217.1 0.31 +0.5
4,044,820 + Xcc-8004.4217.1 0.31 -0.6
4,044,821 - Xcc-8004.4217.1 0.31 +0.8
4,044,821 - Xcc-8004.4217.1 0.31 -0.2
4,044,821 - Xcc-8004.4217.1 0.31 +1.2
4,044,821 - Xcc-8004.4217.1 0.31 -2.1
4,044,821 - Xcc-8004.4217.1 0.31 -0.6
4,044,821 - Xcc-8004.4217.1 0.31 +0.1
4,044,821 - Xcc-8004.4217.1 0.31 -0.6
4,044,942 + Xcc-8004.4217.1 0.47 +0.5
4,044,942 + Xcc-8004.4217.1 0.47 -0.5
4,044,942 + Xcc-8004.4217.1 0.47 +0.4
4,044,942 + Xcc-8004.4217.1 0.47 -0.3
4,044,942 + Xcc-8004.4217.1 0.47 +0.6
4,044,943 - Xcc-8004.4217.1 0.47 +0.2
4,044,943 - Xcc-8004.4217.1 0.47 +1.8
4,044,965 - Xcc-8004.4217.1 0.50 -0.0
4,045,093 + Xcc-8004.4217.1 0.66 -0.9
4,045,093 + Xcc-8004.4217.1 0.66 +0.1
4,045,093 + Xcc-8004.4217.1 0.66 -1.1
4,045,093 + Xcc-8004.4217.1 0.66 -0.1
4,045,094 - Xcc-8004.4217.1 0.66 +0.6
4,045,094 - Xcc-8004.4217.1 0.66 -0.7
4,045,094 - Xcc-8004.4217.1 0.66 -1.0
4,045,094 - Xcc-8004.4217.1 0.66 +0.4
4,045,094 - Xcc-8004.4217.1 0.66 +0.3
4,045,094 - Xcc-8004.4217.1 0.66 +0.0
4,045,177 + Xcc-8004.4217.1 0.77 -0.3
4,045,177 + Xcc-8004.4217.1 0.77 +1.0
4,045,177 + Xcc-8004.4217.1 0.77 +0.4
4,045,177 + Xcc-8004.4217.1 0.77 -2.2
4,045,178 - Xcc-8004.4217.1 0.77 +1.8
4,045,178 - Xcc-8004.4217.1 0.77 +1.1
4,045,178 - Xcc-8004.4217.1 0.77 -0.4
4,045,178 - Xcc-8004.4217.1 0.77 +0.3
4,045,201 + Xcc-8004.4217.1 0.80 -1.1
4,045,201 + Xcc-8004.4217.1 0.80 +0.3
4,045,202 - Xcc-8004.4217.1 0.80 +0.9
4,045,216 + Xcc-8004.4217.1 0.82 +1.1
4,045,357 + -0.9
4,045,407 - -0.1
4,045,422 - +0.2
4,045,422 - -3.2
4,045,422 - -0.2
4,045,422 - -0.0
4,045,422 - -0.2
4,045,422 - -0.4
4,045,422 - +1.1
4,045,426 - +0.2
4,045,426 - +0.0
4,045,426 - -0.6
4,045,447 - +0.7
4,045,478 + -0.3
4,045,478 + -0.1
4,045,515 - -1.1
4,045,515 - +0.2
4,045,515 - +1.4
4,045,515 - +0.3
4,045,515 - +0.7
4,045,536 - -1.7
4,045,536 - +0.1
4,045,536 - -1.5
4,045,540 - -0.0
4,045,540 - +0.7
4,045,540 - -1.0
4,045,736 + Xcc-8004.4219.1 0.16 -0.3
4,045,736 + Xcc-8004.4219.1 0.16 +0.8
4,045,737 - Xcc-8004.4219.1 0.16 -0.0
4,045,737 - Xcc-8004.4219.1 0.16 +1.8
4,045,832 + Xcc-8004.4219.1 0.26 +1.0
4,045,832 + Xcc-8004.4219.1 0.26 +0.4
4,045,832 + Xcc-8004.4219.1 0.26 -0.1
4,045,832 + Xcc-8004.4219.1 0.26 -0.1
4,045,832 + Xcc-8004.4219.1 0.26 -2.0
4,045,833 - Xcc-8004.4219.1 0.26 +1.3
4,045,833 - Xcc-8004.4219.1 0.26 -0.9
4,045,833 - Xcc-8004.4219.1 0.26 -0.9
4,045,833 - Xcc-8004.4219.1 0.26 -0.5
4,045,833 - Xcc-8004.4219.1 0.26 +1.5
4,045,833 - Xcc-8004.4219.1 0.26 +0.4
4,045,845 + Xcc-8004.4219.1 0.27 -0.1
4,045,846 - Xcc-8004.4219.1 0.27 +1.1
4,045,846 - Xcc-8004.4219.1 0.27 -0.5
4,045,846 - Xcc-8004.4219.1 0.27 -0.7
4,046,045 + Xcc-8004.4219.1 0.49 -0.3
4,046,045 + Xcc-8004.4219.1 0.49 +0.1
4,046,045 + Xcc-8004.4219.1 0.49 -0.3
4,046,045 + Xcc-8004.4219.1 0.49 -1.9
4,046,045 + Xcc-8004.4219.1 0.49 +0.3
4,046,045 + Xcc-8004.4219.1 0.49 +1.1
4,046,045 + Xcc-8004.4219.1 0.49 -0.2
4,046,045 + Xcc-8004.4219.1 0.49 +0.0
4,046,045 + Xcc-8004.4219.1 0.49 +0.8
4,046,045 + Xcc-8004.4219.1 0.49 -0.1
4,046,045 + Xcc-8004.4219.1 0.49 -1.3
4,046,045 + Xcc-8004.4219.1 0.49 +0.4
4,046,045 + Xcc-8004.4219.1 0.49 -0.6
4,046,045 + Xcc-8004.4219.1 0.49 -0.2
4,046,045 + Xcc-8004.4219.1 0.49 +0.2
4,046,045 + Xcc-8004.4219.1 0.49 +0.7
4,046,045 + Xcc-8004.4219.1 0.49 +0.7
4,046,045 + Xcc-8004.4219.1 0.49 +1.1
4,046,045 + Xcc-8004.4219.1 0.49 +1.3
4,046,045 + Xcc-8004.4219.1 0.49 -0.0
4,046,045 + Xcc-8004.4219.1 0.49 +0.4
4,046,045 + Xcc-8004.4219.1 0.49 +0.9
4,046,045 + Xcc-8004.4219.1 0.49 +0.3
4,046,045 + Xcc-8004.4219.1 0.49 +0.5
4,046,045 + Xcc-8004.4219.1 0.49 +0.2
4,046,046 - Xcc-8004.4219.1 0.49 -0.4
4,046,046 - Xcc-8004.4219.1 0.49 -0.4
4,046,046 - Xcc-8004.4219.1 0.49 +1.8
4,046,046 - Xcc-8004.4219.1 0.49 +0.7
4,046,046 - Xcc-8004.4219.1 0.49 -0.7
4,046,046 - Xcc-8004.4219.1 0.49 -0.2
4,046,046 - Xcc-8004.4219.1 0.49 +0.3
4,046,046 - Xcc-8004.4219.1 0.49 -1.3
4,046,046 - Xcc-8004.4219.1 0.49 -0.3
4,046,046 - Xcc-8004.4219.1 0.49 +0.4
4,046,046 - Xcc-8004.4219.1 0.49 -0.3
4,046,046 - Xcc-8004.4219.1 0.49 -0.2
4,046,046 - Xcc-8004.4219.1 0.49 +1.3
4,046,046 - Xcc-8004.4219.1 0.49 +0.3
4,046,046 - Xcc-8004.4219.1 0.49 -0.7
4,046,046 - Xcc-8004.4219.1 0.49 -1.9
4,046,046 - Xcc-8004.4219.1 0.49 -0.7
4,046,090 + Xcc-8004.4219.1 0.53 +0.1
4,046,090 + Xcc-8004.4219.1 0.53 -0.6
4,046,090 + Xcc-8004.4219.1 0.53 -0.5
4,046,090 + Xcc-8004.4219.1 0.53 +0.6
4,046,091 - Xcc-8004.4219.1 0.53 +0.4
4,046,174 + Xcc-8004.4219.1 0.62 +0.4
4,046,175 - Xcc-8004.4219.1 0.62 +0.7
4,046,175 - Xcc-8004.4219.1 0.62 +0.6
4,046,348 + Xcc-8004.4219.1 0.81 +0.1
4,046,348 + Xcc-8004.4219.1 0.81 -0.2
4,046,349 - Xcc-8004.4219.1 0.81 -0.7
4,046,349 - Xcc-8004.4219.1 0.81 +0.4
4,046,382 + Xcc-8004.4219.1 0.84 +0.8
4,046,382 + Xcc-8004.4219.1 0.84 +0.0
4,046,383 - Xcc-8004.4219.1 0.84 -1.3
4,046,383 - Xcc-8004.4219.1 0.84 -0.5
4,046,456 + -0.5
4,046,457 - -1.6
4,046,457 - +0.4
4,046,457 - -0.7
4,046,516 + +0.1
4,046,559 + -0.3
4,046,559 + +0.0
4,046,559 + +0.4
4,046,559 + -0.9
4,046,560 - +0.4
4,046,560 - +0.5
4,046,560 - -0.7

Or see this region's nucleotide sequence