Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3206.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3205.1 and Xcc-8004.3206.1 are separated by 279 nucleotidesXcc-8004.3206.1 and Xcc-8004.3207.1 overlap by 13 nucleotidesXcc-8004.3207.1 and Xcc-8004.3208.1 overlap by 4 nucleotides Xcc-8004.3205.1: Xcc-8004.3205.1 - motif=eukaryotic putative RNA-binding region RNP-1 signature, at 3,118,116 to 3,118,733 Xcc-8004.3205.1 Xcc-8004.3206.1: Xcc-8004.3206.1 - Acyl-CoA dehydrogenase/oxidase domain protein, at 3,119,013 to 3,120,008 Xcc-8004.3206.1 Xcc-8004.3207.1: Xcc-8004.3207.1 - LmbE-like protein, at 3,119,996 to 3,120,757 Xcc-8004.3207.1 Xcc-8004.3208.1: Xcc-8004.3208.1 - Methyltransferase type 12, at 3,120,754 to 3,121,350 Xcc-8004.3208.1 Position (kb) 3119 3120 3121Strain fitness (log2 ratio) -2 -1 0 1at 3118.090 kb on + strandat 3118.117 kb on + strandat 3118.117 kb on + strandat 3118.137 kb on + strandat 3118.138 kb on - strandat 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.388 kb on + strand, within Xcc-8004.3205.1at 3118.389 kb on - strand, within Xcc-8004.3205.1at 3118.389 kb on - strand, within Xcc-8004.3205.1at 3118.399 kb on + strand, within Xcc-8004.3205.1at 3118.400 kb on - strand, within Xcc-8004.3205.1at 3118.400 kb on - strand, within Xcc-8004.3205.1at 3118.419 kb on - strand, within Xcc-8004.3205.1at 3118.487 kb on - strand, within Xcc-8004.3205.1at 3118.521 kb on + strand, within Xcc-8004.3205.1at 3118.521 kb on + strand, within Xcc-8004.3205.1at 3118.521 kb on + strand, within Xcc-8004.3205.1at 3118.522 kb on - strand, within Xcc-8004.3205.1at 3118.522 kb on - strand, within Xcc-8004.3205.1at 3118.695 kb on + strandat 3118.695 kb on + strandat 3118.695 kb on + strandat 3118.696 kb on - strandat 3118.766 kb on + strandat 3118.767 kb on - strandat 3119.001 kb on + strandat 3119.002 kb on - strandat 3119.102 kb on + strandat 3119.102 kb on + strandat 3119.103 kb on - strandat 3119.103 kb on - strandat 3119.135 kb on - strand, within Xcc-8004.3206.1at 3119.135 kb on - strand, within Xcc-8004.3206.1at 3119.390 kb on + strand, within Xcc-8004.3206.1at 3119.390 kb on + strand, within Xcc-8004.3206.1at 3119.390 kb on + strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.391 kb on - strand, within Xcc-8004.3206.1at 3119.647 kb on + strand, within Xcc-8004.3206.1at 3119.647 kb on + strand, within Xcc-8004.3206.1at 3119.647 kb on + strand, within Xcc-8004.3206.1at 3119.648 kb on - strand, within Xcc-8004.3206.1at 3119.825 kb on + strand, within Xcc-8004.3206.1at 3120.006 kb on + strandat 3120.243 kb on - strand, within Xcc-8004.3207.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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3,118,090 + +0.5
3,118,117 + -0.4
3,118,117 + +1.5
3,118,137 + +0.4
3,118,138 - -0.7
3,118,388 + Xcc-8004.3205.1 0.44 -0.9
3,118,388 + Xcc-8004.3205.1 0.44 +1.2
3,118,388 + Xcc-8004.3205.1 0.44 -0.5
3,118,388 + Xcc-8004.3205.1 0.44 -2.4
3,118,388 + Xcc-8004.3205.1 0.44 -0.6
3,118,388 + Xcc-8004.3205.1 0.44 -0.5
3,118,388 + Xcc-8004.3205.1 0.44 -2.0
3,118,388 + Xcc-8004.3205.1 0.44 -0.9
3,118,388 + Xcc-8004.3205.1 0.44 -0.0
3,118,389 - Xcc-8004.3205.1 0.44 -1.4
3,118,389 - Xcc-8004.3205.1 0.44 +1.6
3,118,399 + Xcc-8004.3205.1 0.46 -0.6
3,118,400 - Xcc-8004.3205.1 0.46 -1.7
3,118,400 - Xcc-8004.3205.1 0.46 -0.2
3,118,419 - Xcc-8004.3205.1 0.49 -0.7
3,118,487 - Xcc-8004.3205.1 0.60 -0.1
3,118,521 + Xcc-8004.3205.1 0.66 -0.4
3,118,521 + Xcc-8004.3205.1 0.66 +0.5
3,118,521 + Xcc-8004.3205.1 0.66 -0.2
3,118,522 - Xcc-8004.3205.1 0.66 +0.3
3,118,522 - Xcc-8004.3205.1 0.66 -0.6
3,118,695 + -0.4
3,118,695 + -0.4
3,118,695 + -0.4
3,118,696 - -0.8
3,118,766 + -0.9
3,118,767 - -1.0
3,119,001 + +0.0
3,119,002 - -0.3
3,119,102 + -0.4
3,119,102 + -1.2
3,119,103 - -0.1
3,119,103 - -0.5
3,119,135 - Xcc-8004.3206.1 0.12 +0.3
3,119,135 - Xcc-8004.3206.1 0.12 -0.1
3,119,390 + Xcc-8004.3206.1 0.38 +0.6
3,119,390 + Xcc-8004.3206.1 0.38 -0.4
3,119,390 + Xcc-8004.3206.1 0.38 -0.4
3,119,391 - Xcc-8004.3206.1 0.38 -0.4
3,119,391 - Xcc-8004.3206.1 0.38 +0.4
3,119,391 - Xcc-8004.3206.1 0.38 +0.1
3,119,391 - Xcc-8004.3206.1 0.38 +0.8
3,119,391 - Xcc-8004.3206.1 0.38 +0.3
3,119,391 - Xcc-8004.3206.1 0.38 +0.4
3,119,647 + Xcc-8004.3206.1 0.64 +1.6
3,119,647 + Xcc-8004.3206.1 0.64 +0.5
3,119,647 + Xcc-8004.3206.1 0.64 -0.6
3,119,648 - Xcc-8004.3206.1 0.64 -1.2
3,119,825 + Xcc-8004.3206.1 0.82 +0.9
3,120,006 + +0.1
3,120,243 - Xcc-8004.3207.1 0.32 -0.7

Or see this region's nucleotide sequence