Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2408.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2406.1 and Xcc-8004.2408.1 are separated by 143 nucleotidesXcc-8004.2408.1 and Xcc-8004.2409.1 overlap by 4 nucleotidesXcc-8004.2409.1 and Xcc-8004.2410.1 are separated by 71 nucleotides Xcc-8004.2406.1: Xcc-8004.2406.1 - Manganese transport protein MntH, at 2,351,298 to 2,352,632 Xcc-8004.2406.1 Xcc-8004.2408.1: Xcc-8004.2408.1 - Mn-dependent transcriptional regulator MntR, at 2,352,776 to 2,353,243 Xcc-8004.2408.1 Xcc-8004.2409.1: Xcc-8004.2409.1 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.-), at 2,353,240 to 2,353,755 Xcc-8004.2409.1 Xcc-8004.2410.1: Xcc-8004.2410.1 - 3'-to-5' oligoribonuclease (orn), at 2,353,827 to 2,354,411 Xcc-8004.2410.1 Position (kb) 2352 2353 2354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.933 kb on + strand, within Xcc-8004.2406.1at 2351.934 kb on - strand, within Xcc-8004.2406.1at 2351.975 kb on - strand, within Xcc-8004.2406.1at 2351.975 kb on - strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.476 kb on + strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.477 kb on - strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.478 kb on + strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.479 kb on - strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.496 kb on + strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.497 kb on - strand, within Xcc-8004.2406.1at 2352.665 kb on + strandat 2352.666 kb on - strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.667 kb on + strandat 2352.668 kb on - strandat 2352.677 kb on + strandat 2352.677 kb on + strandat 2352.677 kb on + strandat 2352.707 kb on + strandat 2352.707 kb on + strandat 2352.707 kb on + strandat 2352.707 kb on + strandat 2352.708 kb on - strandat 2352.708 kb on - strandat 2352.708 kb on - strandat 2352.708 kb on - strandat 2352.732 kb on + strandat 2352.732 kb on + strandat 2352.732 kb on + strandat 2352.732 kb on + strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.733 kb on - strandat 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.890 kb on + strand, within Xcc-8004.2408.1at 2352.960 kb on + strand, within Xcc-8004.2408.1at 2352.961 kb on - strand, within Xcc-8004.2408.1at 2353.771 kb on + strandat 2353.772 kb on - strandat 2353.826 kb on + strandat 2353.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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2,351,926 + Xcc-8004.2406.1 0.47 +0.7
2,351,926 + Xcc-8004.2406.1 0.47 -0.3
2,351,926 + Xcc-8004.2406.1 0.47 +0.5
2,351,926 + Xcc-8004.2406.1 0.47 -0.2
2,351,927 - Xcc-8004.2406.1 0.47 -1.8
2,351,927 - Xcc-8004.2406.1 0.47 -0.4
2,351,927 - Xcc-8004.2406.1 0.47 -0.1
2,351,933 + Xcc-8004.2406.1 0.48 +0.5
2,351,934 - Xcc-8004.2406.1 0.48 -0.7
2,351,975 - Xcc-8004.2406.1 0.51 -1.4
2,351,975 - Xcc-8004.2406.1 0.51 +0.6
2,352,476 + Xcc-8004.2406.1 0.88 +0.7
2,352,476 + Xcc-8004.2406.1 0.88 -0.5
2,352,476 + Xcc-8004.2406.1 0.88 +2.2
2,352,476 + Xcc-8004.2406.1 0.88 -0.2
2,352,476 + Xcc-8004.2406.1 0.88 -0.4
2,352,476 + Xcc-8004.2406.1 0.88 +1.4
2,352,476 + Xcc-8004.2406.1 0.88 +1.2
2,352,476 + Xcc-8004.2406.1 0.88 -0.2
2,352,476 + Xcc-8004.2406.1 0.88 +1.6
2,352,477 - Xcc-8004.2406.1 0.88 +0.5
2,352,477 - Xcc-8004.2406.1 0.88 +0.3
2,352,477 - Xcc-8004.2406.1 0.88 -0.8
2,352,477 - Xcc-8004.2406.1 0.88 -1.4
2,352,477 - Xcc-8004.2406.1 0.88 -0.7
2,352,477 - Xcc-8004.2406.1 0.88 -0.1
2,352,477 - Xcc-8004.2406.1 0.88 +0.0
2,352,477 - Xcc-8004.2406.1 0.88 -1.0
2,352,477 - Xcc-8004.2406.1 0.88 -0.5
2,352,477 - Xcc-8004.2406.1 0.88 -1.9
2,352,477 - Xcc-8004.2406.1 0.88 -0.8
2,352,478 + Xcc-8004.2406.1 0.88 -1.0
2,352,478 + Xcc-8004.2406.1 0.88 -3.1
2,352,478 + Xcc-8004.2406.1 0.88 +1.9
2,352,478 + Xcc-8004.2406.1 0.88 -1.5
2,352,478 + Xcc-8004.2406.1 0.88 +0.5
2,352,478 + Xcc-8004.2406.1 0.88 -0.1
2,352,478 + Xcc-8004.2406.1 0.88 +0.3
2,352,479 - Xcc-8004.2406.1 0.88 +1.3
2,352,479 - Xcc-8004.2406.1 0.88 +0.3
2,352,479 - Xcc-8004.2406.1 0.88 +0.6
2,352,479 - Xcc-8004.2406.1 0.88 -0.0
2,352,479 - Xcc-8004.2406.1 0.88 +0.6
2,352,496 + Xcc-8004.2406.1 0.90 -0.1
2,352,496 + Xcc-8004.2406.1 0.90 +0.4
2,352,496 + Xcc-8004.2406.1 0.90 +0.4
2,352,496 + Xcc-8004.2406.1 0.90 +1.3
2,352,496 + Xcc-8004.2406.1 0.90 -0.2
2,352,497 - Xcc-8004.2406.1 0.90 -0.4
2,352,497 - Xcc-8004.2406.1 0.90 +1.3
2,352,497 - Xcc-8004.2406.1 0.90 +0.3
2,352,497 - Xcc-8004.2406.1 0.90 -0.2
2,352,665 + -0.4
2,352,666 - -1.1
2,352,667 + -0.1
2,352,667 + -0.4
2,352,667 + +0.4
2,352,667 + -1.2
2,352,667 + -1.0
2,352,668 - +2.6
2,352,677 + +0.4
2,352,677 + +0.4
2,352,677 + -0.5
2,352,707 + -0.3
2,352,707 + -1.6
2,352,707 + +0.2
2,352,707 + +0.6
2,352,708 - -0.9
2,352,708 - +0.7
2,352,708 - +0.5
2,352,708 - +1.6
2,352,732 + +1.8
2,352,732 + -1.0
2,352,732 + +0.2
2,352,732 + -0.3
2,352,733 - +0.6
2,352,733 - -0.4
2,352,733 - +0.0
2,352,733 - +1.3
2,352,733 - -0.7
2,352,890 + Xcc-8004.2408.1 0.24 -0.4
2,352,890 + Xcc-8004.2408.1 0.24 -0.0
2,352,890 + Xcc-8004.2408.1 0.24 -2.2
2,352,890 + Xcc-8004.2408.1 0.24 +0.0
2,352,890 + Xcc-8004.2408.1 0.24 -2.0
2,352,890 + Xcc-8004.2408.1 0.24 -1.3
2,352,890 + Xcc-8004.2408.1 0.24 -0.7
2,352,960 + Xcc-8004.2408.1 0.39 +1.0
2,352,961 - Xcc-8004.2408.1 0.40 +0.4
2,353,771 + -0.1
2,353,772 - +0.4
2,353,826 + -1.8
2,353,826 + +0.4

Or see this region's nucleotide sequence