Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1567.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1565.1 and Xcc-8004.1566.1 are separated by 3 nucleotidesXcc-8004.1566.1 and Xcc-8004.1567.1 are separated by 207 nucleotidesXcc-8004.1567.1 and Xcc-8004.1568.1 are separated by 139 nucleotidesXcc-8004.1568.1 and Xcc-8004.1569.1 are separated by 218 nucleotides Xcc-8004.1565.1: Xcc-8004.1565.1 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 1,503,714 to 1,504,679 Xcc-8004.1565.1 Xcc-8004.1566.1: Xcc-8004.1566.1 - Putative activity regulator of membrane protease YbbK, at 1,504,683 to 1,505,117 Xcc-8004.1566.1 Xcc-8004.1567.1: Xcc-8004.1567.1 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 1,505,325 to 1,506,434 Xcc-8004.1567.1 Xcc-8004.1568.1: Xcc-8004.1568.1 - Glycine cleavage system H protein, at 1,506,574 to 1,506,969 Xcc-8004.1568.1 Xcc-8004.1569.1: Xcc-8004.1569.1 - hypothetical protein, at 1,507,188 to 1,507,481 Xcc-8004.1569.1 Position (kb) 1505 1506 1507Strain fitness (log2 ratio) -2 -1 0 1 2at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.480 kb on - strand, within Xcc-8004.1565.1at 1504.497 kb on + strand, within Xcc-8004.1565.1at 1504.658 kb on - strandat 1504.658 kb on - strandat 1504.658 kb on - strandat 1504.881 kb on + strand, within Xcc-8004.1566.1at 1504.881 kb on + strand, within Xcc-8004.1566.1at 1504.882 kb on - strand, within Xcc-8004.1566.1at 1505.155 kb on + strandat 1505.526 kb on + strand, within Xcc-8004.1567.1at 1505.577 kb on + strand, within Xcc-8004.1567.1at 1505.577 kb on + strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.578 kb on - strand, within Xcc-8004.1567.1at 1505.628 kb on + strand, within Xcc-8004.1567.1at 1505.628 kb on + strand, within Xcc-8004.1567.1at 1505.629 kb on - strand, within Xcc-8004.1567.1at 1505.629 kb on - strand, within Xcc-8004.1567.1at 1505.904 kb on + strand, within Xcc-8004.1567.1at 1506.078 kb on + strand, within Xcc-8004.1567.1at 1506.422 kb on - strandat 1506.527 kb on - strandat 1506.552 kb on + strandat 1506.553 kb on - strandat 1506.553 kb on - strandat 1506.553 kb on - strandat 1506.697 kb on + strand, within Xcc-8004.1568.1at 1506.698 kb on - strand, within Xcc-8004.1568.1at 1506.698 kb on - strand, within Xcc-8004.1568.1at 1506.784 kb on + strand, within Xcc-8004.1568.1at 1507.190 kb on - strandat 1507.190 kb on - strandat 1507.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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1,504,480 - Xcc-8004.1565.1 0.79 -0.7
1,504,480 - Xcc-8004.1565.1 0.79 +0.5
1,504,480 - Xcc-8004.1565.1 0.79 -0.8
1,504,480 - Xcc-8004.1565.1 0.79 +0.0
1,504,480 - Xcc-8004.1565.1 0.79 -0.1
1,504,497 + Xcc-8004.1565.1 0.81 +2.3
1,504,658 - +0.3
1,504,658 - +1.0
1,504,658 - -0.5
1,504,881 + Xcc-8004.1566.1 0.46 -0.4
1,504,881 + Xcc-8004.1566.1 0.46 +1.4
1,504,882 - Xcc-8004.1566.1 0.46 -0.1
1,505,155 + -1.3
1,505,526 + Xcc-8004.1567.1 0.18 -0.3
1,505,577 + Xcc-8004.1567.1 0.23 +0.4
1,505,577 + Xcc-8004.1567.1 0.23 -0.3
1,505,578 - Xcc-8004.1567.1 0.23 -0.9
1,505,578 - Xcc-8004.1567.1 0.23 -0.3
1,505,578 - Xcc-8004.1567.1 0.23 +0.5
1,505,578 - Xcc-8004.1567.1 0.23 -0.1
1,505,578 - Xcc-8004.1567.1 0.23 -0.0
1,505,628 + Xcc-8004.1567.1 0.27 +0.5
1,505,628 + Xcc-8004.1567.1 0.27 +0.2
1,505,629 - Xcc-8004.1567.1 0.27 -0.2
1,505,629 - Xcc-8004.1567.1 0.27 +0.6
1,505,904 + Xcc-8004.1567.1 0.52 -1.4
1,506,078 + Xcc-8004.1567.1 0.68 -0.7
1,506,422 - -1.3
1,506,527 - -0.9
1,506,552 + +0.3
1,506,553 - -0.9
1,506,553 - -0.3
1,506,553 - -0.3
1,506,697 + Xcc-8004.1568.1 0.31 +1.5
1,506,698 - Xcc-8004.1568.1 0.31 -1.6
1,506,698 - Xcc-8004.1568.1 0.31 -1.1
1,506,784 + Xcc-8004.1568.1 0.53 -1.6
1,507,190 - -1.8
1,507,190 - -0.3
1,507,190 - -0.5

Or see this region's nucleotide sequence