Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5813

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5811 and Pf6N2E2_5812 are separated by 333 nucleotidesPf6N2E2_5812 and Pf6N2E2_5813 are separated by 81 nucleotidesPf6N2E2_5813 and Pf6N2E2_5814 are separated by 85 nucleotidesPf6N2E2_5814 and Pf6N2E2_5815 are separated by 8 nucleotides Pf6N2E2_5811 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 6,630,319 to 6,631,668 _5811 Pf6N2E2_5812 - Transcriptional regulator, MarR family, at 6,632,002 to 6,632,448 _5812 Pf6N2E2_5813 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,632,530 to 6,633,696 _5813 Pf6N2E2_5814 - Glutaredoxin, at 6,633,782 to 6,634,249 _5814 Pf6N2E2_5815 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 6,634,258 to 6,634,803 _5815 Position (kb) 6632 6633 6634Strain fitness (log2 ratio) -2 -1 0 1 2at 6631.619 kb on - strandat 6631.675 kb on + strandat 6631.676 kb on - strandat 6631.676 kb on - strandat 6631.676 kb on - strandat 6631.691 kb on + strandat 6631.691 kb on + strandat 6631.691 kb on + strandat 6631.692 kb on - strandat 6631.692 kb on - strandat 6631.697 kb on + strandat 6631.698 kb on - strandat 6631.698 kb on - strandat 6631.713 kb on + strandat 6631.749 kb on + strandat 6631.749 kb on + strandat 6631.749 kb on + strandat 6631.763 kb on + strandat 6631.763 kb on + strandat 6631.763 kb on + strandat 6631.763 kb on + strandat 6631.763 kb on + strandat 6631.764 kb on - strandat 6631.764 kb on - strandat 6631.764 kb on - strandat 6631.764 kb on - strandat 6631.830 kb on - strandat 6631.871 kb on + strandat 6631.871 kb on + strandat 6631.871 kb on + strandat 6631.871 kb on + strandat 6631.871 kb on + strandat 6631.871 kb on + strandat 6631.872 kb on - strandat 6631.872 kb on - strandat 6631.872 kb on - strandat 6631.872 kb on - strandat 6631.872 kb on - strandat 6631.872 kb on - strandat 6631.872 kb on - strandat 6631.873 kb on + strandat 6631.873 kb on + strandat 6631.873 kb on + strandat 6631.873 kb on + strandat 6631.874 kb on - strandat 6631.874 kb on - strandat 6631.981 kb on + strandat 6631.982 kb on - strandat 6631.982 kb on - strandat 6631.982 kb on - strandat 6631.982 kb on - strandat 6631.982 kb on - strandat 6632.456 kb on + strandat 6632.693 kb on - strand, within Pf6N2E2_5813at 6632.872 kb on + strand, within Pf6N2E2_5813at 6632.872 kb on + strand, within Pf6N2E2_5813at 6632.873 kb on - strand, within Pf6N2E2_5813at 6632.998 kb on + strand, within Pf6N2E2_5813at 6632.998 kb on + strand, within Pf6N2E2_5813at 6632.998 kb on + strand, within Pf6N2E2_5813at 6632.999 kb on - strand, within Pf6N2E2_5813at 6633.184 kb on + strand, within Pf6N2E2_5813at 6633.185 kb on - strand, within Pf6N2E2_5813at 6633.233 kb on - strand, within Pf6N2E2_5813at 6633.233 kb on - strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.810 kb on + strandat 6633.810 kb on + strandat 6633.811 kb on - strandat 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strandat 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.956 kb on + strand, within Pf6N2E2_5814at 6634.017 kb on + strand, within Pf6N2E2_5814at 6634.157 kb on - strand, within Pf6N2E2_5814at 6634.160 kb on - strand, within Pf6N2E2_5814at 6634.160 kb on - strand, within Pf6N2E2_5814at 6634.160 kb on - strand, within Pf6N2E2_5814at 6634.195 kb on + strand, within Pf6N2E2_5814at 6634.196 kb on - strand, within Pf6N2E2_5814at 6634.259 kb on + strandat 6634.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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6,631,619 - +0.2
6,631,675 + +0.1
6,631,676 - +0.4
6,631,676 - +0.7
6,631,676 - +0.8
6,631,691 + -0.8
6,631,691 + +0.4
6,631,691 + +0.1
6,631,692 - +0.8
6,631,692 - -2.5
6,631,697 + -0.3
6,631,698 - -0.3
6,631,698 - -0.4
6,631,713 + +0.2
6,631,749 + +0.2
6,631,749 + -0.8
6,631,749 + -1.8
6,631,763 + -0.3
6,631,763 + -0.4
6,631,763 + +2.2
6,631,763 + +0.6
6,631,763 + -1.5
6,631,764 - +1.2
6,631,764 - +0.2
6,631,764 - -0.3
6,631,764 - -0.2
6,631,830 - +0.3
6,631,871 + -0.3
6,631,871 + -0.1
6,631,871 + -1.3
6,631,871 + +1.2
6,631,871 + -0.6
6,631,871 + -0.3
6,631,872 - -1.2
6,631,872 - -0.4
6,631,872 - +0.2
6,631,872 - -2.1
6,631,872 - -0.2
6,631,872 - +0.2
6,631,872 - -1.1
6,631,873 + -0.4
6,631,873 + -0.6
6,631,873 + +0.2
6,631,873 + -0.6
6,631,874 - -1.5
6,631,874 - +0.1
6,631,981 + +0.2
6,631,982 - -0.9
6,631,982 - +0.7
6,631,982 - -1.2
6,631,982 - +0.6
6,631,982 - +1.0
6,632,456 + +0.6
6,632,693 - Pf6N2E2_5813 0.14 -0.3
6,632,872 + Pf6N2E2_5813 0.29 -1.6
6,632,872 + Pf6N2E2_5813 0.29 -0.6
6,632,873 - Pf6N2E2_5813 0.29 +0.3
6,632,998 + Pf6N2E2_5813 0.40 -0.2
6,632,998 + Pf6N2E2_5813 0.40 +1.3
6,632,998 + Pf6N2E2_5813 0.40 +0.5
6,632,999 - Pf6N2E2_5813 0.40 +1.2
6,633,184 + Pf6N2E2_5813 0.56 +0.4
6,633,185 - Pf6N2E2_5813 0.56 -0.9
6,633,233 - Pf6N2E2_5813 0.60 -0.6
6,633,233 - Pf6N2E2_5813 0.60 +0.4
6,633,452 + Pf6N2E2_5813 0.79 +0.3
6,633,452 + Pf6N2E2_5813 0.79 -0.1
6,633,452 + Pf6N2E2_5813 0.79 +1.8
6,633,452 + Pf6N2E2_5813 0.79 -0.2
6,633,452 + Pf6N2E2_5813 0.79 +0.8
6,633,452 + Pf6N2E2_5813 0.79 +0.0
6,633,453 - Pf6N2E2_5813 0.79 -0.6
6,633,453 - Pf6N2E2_5813 0.79 +0.3
6,633,453 - Pf6N2E2_5813 0.79 -0.3
6,633,453 - Pf6N2E2_5813 0.79 +0.1
6,633,453 - Pf6N2E2_5813 0.79 +0.7
6,633,453 - Pf6N2E2_5813 0.79 +0.1
6,633,453 - Pf6N2E2_5813 0.79 +0.7
6,633,810 + +0.3
6,633,810 + +0.1
6,633,811 - +0.0
6,633,834 + Pf6N2E2_5814 0.11 +0.7
6,633,834 + Pf6N2E2_5814 0.11 -0.1
6,633,834 + Pf6N2E2_5814 0.11 -0.0
6,633,834 + Pf6N2E2_5814 0.11 +0.7
6,633,834 + Pf6N2E2_5814 0.11 +0.4
6,633,834 + Pf6N2E2_5814 0.11 -0.6
6,633,834 + Pf6N2E2_5814 0.11 +0.7
6,633,834 + Pf6N2E2_5814 0.11 -0.5
6,633,834 + Pf6N2E2_5814 0.11 +0.5
6,633,834 + Pf6N2E2_5814 0.11 -0.0
6,633,834 + Pf6N2E2_5814 0.11 -0.2
6,633,834 + Pf6N2E2_5814 0.11 -0.3
6,633,834 + Pf6N2E2_5814 0.11 +0.4
6,633,834 + Pf6N2E2_5814 0.11 +0.1
6,633,834 + Pf6N2E2_5814 0.11 -0.7
6,633,834 + Pf6N2E2_5814 0.11 +0.8
6,633,834 + Pf6N2E2_5814 0.11 -0.7
6,633,834 + Pf6N2E2_5814 0.11 -0.5
6,633,834 + Pf6N2E2_5814 0.11 -0.5
6,633,835 - Pf6N2E2_5814 0.11 +1.2
6,633,835 - Pf6N2E2_5814 0.11 -0.1
6,633,835 - Pf6N2E2_5814 0.11 -0.6
6,633,835 - Pf6N2E2_5814 0.11 -0.5
6,633,835 - +0.2
6,633,835 - Pf6N2E2_5814 0.11 -0.4
6,633,835 - Pf6N2E2_5814 0.11 -1.6
6,633,835 - Pf6N2E2_5814 0.11 -0.4
6,633,835 - Pf6N2E2_5814 0.11 -1.0
6,633,835 - Pf6N2E2_5814 0.11 +0.4
6,633,835 - Pf6N2E2_5814 0.11 +1.4
6,633,956 + Pf6N2E2_5814 0.37 +0.0
6,634,017 + Pf6N2E2_5814 0.50 +0.0
6,634,157 - Pf6N2E2_5814 0.80 -0.9
6,634,160 - Pf6N2E2_5814 0.81 -0.5
6,634,160 - Pf6N2E2_5814 0.81 +1.0
6,634,160 - Pf6N2E2_5814 0.81 -0.7
6,634,195 + Pf6N2E2_5814 0.88 +0.4
6,634,196 - Pf6N2E2_5814 0.88 -0.3
6,634,259 + -0.9
6,634,260 - +0.3

Or see this region's nucleotide sequence