Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5811 and Pf6N2E2_5812 are separated by 333 nucleotides Pf6N2E2_5812 and Pf6N2E2_5813 are separated by 81 nucleotides Pf6N2E2_5813 and Pf6N2E2_5814 are separated by 85 nucleotides Pf6N2E2_5814 and Pf6N2E2_5815 are separated by 8 nucleotides
Pf6N2E2_5811 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 6,630,319 to 6,631,668
_5811
Pf6N2E2_5812 - Transcriptional regulator, MarR family, at 6,632,002 to 6,632,448
_5812
Pf6N2E2_5813 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,632,530 to 6,633,696
_5813
Pf6N2E2_5814 - Glutaredoxin, at 6,633,782 to 6,634,249
_5814
Pf6N2E2_5815 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 6,634,258 to 6,634,803
_5815
Position (kb)
6632
6633
6634 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6631.619 kb on - strand at 6631.675 kb on + strand at 6631.676 kb on - strand at 6631.676 kb on - strand at 6631.676 kb on - strand at 6631.691 kb on + strand at 6631.691 kb on + strand at 6631.691 kb on + strand at 6631.692 kb on - strand at 6631.692 kb on - strand at 6631.697 kb on + strand at 6631.698 kb on - strand at 6631.698 kb on - strand at 6631.713 kb on + strand at 6631.749 kb on + strand at 6631.749 kb on + strand at 6631.749 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.764 kb on - strand at 6631.764 kb on - strand at 6631.764 kb on - strand at 6631.764 kb on - strand at 6631.830 kb on - strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.873 kb on + strand at 6631.873 kb on + strand at 6631.873 kb on + strand at 6631.873 kb on + strand at 6631.874 kb on - strand at 6631.874 kb on - strand at 6631.981 kb on + strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6632.456 kb on + strand at 6632.693 kb on - strand, within Pf6N2E2_5813 at 6632.872 kb on + strand, within Pf6N2E2_5813 at 6632.872 kb on + strand, within Pf6N2E2_5813 at 6632.873 kb on - strand, within Pf6N2E2_5813 at 6632.998 kb on + strand, within Pf6N2E2_5813 at 6632.998 kb on + strand, within Pf6N2E2_5813 at 6632.998 kb on + strand, within Pf6N2E2_5813 at 6632.999 kb on - strand, within Pf6N2E2_5813 at 6633.184 kb on + strand, within Pf6N2E2_5813 at 6633.185 kb on - strand, within Pf6N2E2_5813 at 6633.233 kb on - strand, within Pf6N2E2_5813 at 6633.233 kb on - strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.810 kb on + strand at 6633.810 kb on + strand at 6633.811 kb on - strand at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.956 kb on + strand, within Pf6N2E2_5814 at 6634.017 kb on + strand, within Pf6N2E2_5814 at 6634.157 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.195 kb on + strand, within Pf6N2E2_5814 at 6634.196 kb on - strand, within Pf6N2E2_5814 at 6634.259 kb on + strand at 6634.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 6,631,619 - +0.2 6,631,675 + +0.1 6,631,676 - +0.4 6,631,676 - +0.7 6,631,676 - +0.8 6,631,691 + -0.8 6,631,691 + +0.4 6,631,691 + +0.1 6,631,692 - +0.8 6,631,692 - -2.5 6,631,697 + -0.3 6,631,698 - -0.3 6,631,698 - -0.4 6,631,713 + +0.2 6,631,749 + +0.2 6,631,749 + -0.8 6,631,749 + -1.8 6,631,763 + -0.3 6,631,763 + -0.4 6,631,763 + +2.2 6,631,763 + +0.6 6,631,763 + -1.5 6,631,764 - +1.2 6,631,764 - +0.2 6,631,764 - -0.3 6,631,764 - -0.2 6,631,830 - +0.3 6,631,871 + -0.3 6,631,871 + -0.1 6,631,871 + -1.3 6,631,871 + +1.2 6,631,871 + -0.6 6,631,871 + -0.3 6,631,872 - -1.2 6,631,872 - -0.4 6,631,872 - +0.2 6,631,872 - -2.1 6,631,872 - -0.2 6,631,872 - +0.2 6,631,872 - -1.1 6,631,873 + -0.4 6,631,873 + -0.6 6,631,873 + +0.2 6,631,873 + -0.6 6,631,874 - -1.5 6,631,874 - +0.1 6,631,981 + +0.2 6,631,982 - -0.9 6,631,982 - +0.7 6,631,982 - -1.2 6,631,982 - +0.6 6,631,982 - +1.0 6,632,456 + +0.6 6,632,693 - Pf6N2E2_5813 0.14 -0.3 6,632,872 + Pf6N2E2_5813 0.29 -1.6 6,632,872 + Pf6N2E2_5813 0.29 -0.6 6,632,873 - Pf6N2E2_5813 0.29 +0.3 6,632,998 + Pf6N2E2_5813 0.40 -0.2 6,632,998 + Pf6N2E2_5813 0.40 +1.3 6,632,998 + Pf6N2E2_5813 0.40 +0.5 6,632,999 - Pf6N2E2_5813 0.40 +1.2 6,633,184 + Pf6N2E2_5813 0.56 +0.4 6,633,185 - Pf6N2E2_5813 0.56 -0.9 6,633,233 - Pf6N2E2_5813 0.60 -0.6 6,633,233 - Pf6N2E2_5813 0.60 +0.4 6,633,452 + Pf6N2E2_5813 0.79 +0.3 6,633,452 + Pf6N2E2_5813 0.79 -0.1 6,633,452 + Pf6N2E2_5813 0.79 +1.8 6,633,452 + Pf6N2E2_5813 0.79 -0.2 6,633,452 + Pf6N2E2_5813 0.79 +0.8 6,633,452 + Pf6N2E2_5813 0.79 +0.0 6,633,453 - Pf6N2E2_5813 0.79 -0.6 6,633,453 - Pf6N2E2_5813 0.79 +0.3 6,633,453 - Pf6N2E2_5813 0.79 -0.3 6,633,453 - Pf6N2E2_5813 0.79 +0.1 6,633,453 - Pf6N2E2_5813 0.79 +0.7 6,633,453 - Pf6N2E2_5813 0.79 +0.1 6,633,453 - Pf6N2E2_5813 0.79 +0.7 6,633,810 + +0.3 6,633,810 + +0.1 6,633,811 - +0.0 6,633,834 + Pf6N2E2_5814 0.11 +0.7 6,633,834 + Pf6N2E2_5814 0.11 -0.1 6,633,834 + Pf6N2E2_5814 0.11 -0.0 6,633,834 + Pf6N2E2_5814 0.11 +0.7 6,633,834 + Pf6N2E2_5814 0.11 +0.4 6,633,834 + Pf6N2E2_5814 0.11 -0.6 6,633,834 + Pf6N2E2_5814 0.11 +0.7 6,633,834 + Pf6N2E2_5814 0.11 -0.5 6,633,834 + Pf6N2E2_5814 0.11 +0.5 6,633,834 + Pf6N2E2_5814 0.11 -0.0 6,633,834 + Pf6N2E2_5814 0.11 -0.2 6,633,834 + Pf6N2E2_5814 0.11 -0.3 6,633,834 + Pf6N2E2_5814 0.11 +0.4 6,633,834 + Pf6N2E2_5814 0.11 +0.1 6,633,834 + Pf6N2E2_5814 0.11 -0.7 6,633,834 + Pf6N2E2_5814 0.11 +0.8 6,633,834 + Pf6N2E2_5814 0.11 -0.7 6,633,834 + Pf6N2E2_5814 0.11 -0.5 6,633,834 + Pf6N2E2_5814 0.11 -0.5 6,633,835 - Pf6N2E2_5814 0.11 +1.2 6,633,835 - Pf6N2E2_5814 0.11 -0.1 6,633,835 - Pf6N2E2_5814 0.11 -0.6 6,633,835 - Pf6N2E2_5814 0.11 -0.5 6,633,835 - +0.2 6,633,835 - Pf6N2E2_5814 0.11 -0.4 6,633,835 - Pf6N2E2_5814 0.11 -1.6 6,633,835 - Pf6N2E2_5814 0.11 -0.4 6,633,835 - Pf6N2E2_5814 0.11 -1.0 6,633,835 - Pf6N2E2_5814 0.11 +0.4 6,633,835 - Pf6N2E2_5814 0.11 +1.4 6,633,956 + Pf6N2E2_5814 0.37 +0.0 6,634,017 + Pf6N2E2_5814 0.50 +0.0 6,634,157 - Pf6N2E2_5814 0.80 -0.9 6,634,160 - Pf6N2E2_5814 0.81 -0.5 6,634,160 - Pf6N2E2_5814 0.81 +1.0 6,634,160 - Pf6N2E2_5814 0.81 -0.7 6,634,195 + Pf6N2E2_5814 0.88 +0.4 6,634,196 - Pf6N2E2_5814 0.88 -0.3 6,634,259 + -0.9 6,634,260 - +0.3
Or see this region's nucleotide sequence