Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5044

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5042 and Pf6N2E2_5043 are separated by 21 nucleotidesPf6N2E2_5043 and Pf6N2E2_5044 are separated by 169 nucleotidesPf6N2E2_5044 and Pf6N2E2_5045 are separated by 161 nucleotides Pf6N2E2_5042 - FIG00954572: hypothetical protein, at 5,818,798 to 5,819,277 _5042 Pf6N2E2_5043 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 5,819,299 to 5,819,910 _5043 Pf6N2E2_5044 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,820,080 to 5,820,532 _5044 Pf6N2E2_5045 - Permease of the drug/metabolite transporter (DMT) superfamily, at 5,820,694 to 5,821,596 _5045 Position (kb) 5820 5821Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5819.188 kb on + strand, within Pf6N2E2_5042at 5819.908 kb on + strandat 5819.908 kb on + strandat 5819.909 kb on - strandat 5819.909 kb on - strandat 5819.909 kb on - strandat 5820.081 kb on + strandat 5820.081 kb on + strandat 5820.295 kb on - strand, within Pf6N2E2_5044at 5820.384 kb on + strand, within Pf6N2E2_5044at 5820.385 kb on - strand, within Pf6N2E2_5044at 5820.457 kb on + strand, within Pf6N2E2_5044at 5820.522 kb on + strandat 5820.523 kb on - strandat 5820.526 kb on + strandat 5820.526 kb on + strandat 5820.527 kb on - strandat 5820.527 kb on - strandat 5820.535 kb on - strandat 5820.535 kb on - strandat 5820.604 kb on + strandat 5820.615 kb on + strandat 5820.655 kb on + strandat 5820.655 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.748 kb on + strandat 5820.749 kb on - strandat 5820.749 kb on - strandat 5820.749 kb on - strandat 5820.749 kb on - strandat 5820.749 kb on - strandat 5820.749 kb on - strandat 5820.749 kb on - strandat 5820.749 kb on - strandat 5820.769 kb on + strandat 5820.770 kb on - strandat 5820.853 kb on + strand, within Pf6N2E2_5045at 5820.853 kb on + strand, within Pf6N2E2_5045at 5820.854 kb on - strand, within Pf6N2E2_5045at 5820.854 kb on - strand, within Pf6N2E2_5045at 5821.027 kb on - strand, within Pf6N2E2_5045at 5821.060 kb on - strand, within Pf6N2E2_5045at 5821.088 kb on + strand, within Pf6N2E2_5045at 5821.089 kb on - strand, within Pf6N2E2_5045at 5821.089 kb on - strand, within Pf6N2E2_5045at 5821.166 kb on + strand, within Pf6N2E2_5045at 5821.348 kb on + strand, within Pf6N2E2_5045at 5821.387 kb on + strand, within Pf6N2E2_5045at 5821.387 kb on + strand, within Pf6N2E2_5045at 5821.387 kb on + strand, within Pf6N2E2_5045at 5821.387 kb on + strand, within Pf6N2E2_5045at 5821.387 kb on + strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.388 kb on - strand, within Pf6N2E2_5045at 5821.393 kb on + strand, within Pf6N2E2_5045at 5821.393 kb on + strand, within Pf6N2E2_5045at 5821.393 kb on + strand, within Pf6N2E2_5045at 5821.393 kb on + strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.394 kb on - strand, within Pf6N2E2_5045at 5821.432 kb on + strand, within Pf6N2E2_5045at 5821.432 kb on + strand, within Pf6N2E2_5045at 5821.432 kb on + strand, within Pf6N2E2_5045at 5821.432 kb on + strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.433 kb on - strand, within Pf6N2E2_5045at 5821.438 kb on + strand, within Pf6N2E2_5045at 5821.438 kb on + strand, within Pf6N2E2_5045at 5821.438 kb on + strand, within Pf6N2E2_5045at 5821.439 kb on - strand, within Pf6N2E2_5045at 5821.439 kb on - strand, within Pf6N2E2_5045at 5821.439 kb on - strand, within Pf6N2E2_5045

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,819,188 + Pf6N2E2_5042 0.81 +0.9
5,819,908 + -0.1
5,819,908 + -0.4
5,819,909 - -0.4
5,819,909 - -2.1
5,819,909 - -0.4
5,820,081 + -0.1
5,820,081 + +0.1
5,820,295 - Pf6N2E2_5044 0.47 -2.2
5,820,384 + Pf6N2E2_5044 0.67 +0.2
5,820,385 - Pf6N2E2_5044 0.67 -1.2
5,820,457 + Pf6N2E2_5044 0.83 +0.5
5,820,522 + +0.9
5,820,523 - -0.2
5,820,526 + +2.5
5,820,526 + +0.5
5,820,527 - -0.2
5,820,527 - +0.2
5,820,535 - -1.8
5,820,535 - -1.1
5,820,604 + -0.1
5,820,615 + +0.7
5,820,655 + +0.6
5,820,655 + -0.6
5,820,748 + -1.1
5,820,748 + -1.9
5,820,748 + -1.0
5,820,748 + -2.6
5,820,748 + -2.1
5,820,748 + -1.7
5,820,748 + -1.5
5,820,748 + -0.9
5,820,748 + -2.2
5,820,748 + -1.0
5,820,748 + -1.4
5,820,748 + -0.1
5,820,749 - -1.2
5,820,749 - -1.7
5,820,749 - -2.5
5,820,749 - -1.8
5,820,749 - -1.2
5,820,749 - -2.2
5,820,749 - -1.2
5,820,749 - -1.0
5,820,769 + -1.3
5,820,770 - -1.2
5,820,853 + Pf6N2E2_5045 0.18 -0.2
5,820,853 + Pf6N2E2_5045 0.18 -0.4
5,820,854 - Pf6N2E2_5045 0.18 -1.3
5,820,854 - Pf6N2E2_5045 0.18 -2.6
5,821,027 - Pf6N2E2_5045 0.37 -1.3
5,821,060 - Pf6N2E2_5045 0.41 -0.5
5,821,088 + Pf6N2E2_5045 0.44 -1.3
5,821,089 - Pf6N2E2_5045 0.44 -1.0
5,821,089 - Pf6N2E2_5045 0.44 -0.2
5,821,166 + Pf6N2E2_5045 0.52 -1.8
5,821,348 + Pf6N2E2_5045 0.72 -3.4
5,821,387 + Pf6N2E2_5045 0.77 -2.5
5,821,387 + Pf6N2E2_5045 0.77 -1.3
5,821,387 + Pf6N2E2_5045 0.77 -1.0
5,821,387 + Pf6N2E2_5045 0.77 -0.9
5,821,387 + Pf6N2E2_5045 0.77 -2.8
5,821,388 - Pf6N2E2_5045 0.77 -0.4
5,821,388 - Pf6N2E2_5045 0.77 -2.2
5,821,388 - Pf6N2E2_5045 0.77 -1.2
5,821,388 - Pf6N2E2_5045 0.77 -1.0
5,821,388 - Pf6N2E2_5045 0.77 -0.2
5,821,388 - Pf6N2E2_5045 0.77 -1.4
5,821,388 - Pf6N2E2_5045 0.77 -1.5
5,821,388 - Pf6N2E2_5045 0.77 -1.4
5,821,393 + Pf6N2E2_5045 0.77 -2.4
5,821,393 + Pf6N2E2_5045 0.77 -1.8
5,821,393 + Pf6N2E2_5045 0.77 -1.7
5,821,393 + Pf6N2E2_5045 0.77 -1.3
5,821,394 - Pf6N2E2_5045 0.78 -0.2
5,821,394 - Pf6N2E2_5045 0.78 -0.5
5,821,394 - Pf6N2E2_5045 0.78 +0.4
5,821,394 - Pf6N2E2_5045 0.78 -1.0
5,821,394 - Pf6N2E2_5045 0.78 -0.9
5,821,394 - Pf6N2E2_5045 0.78 -0.8
5,821,394 - Pf6N2E2_5045 0.78 -2.6
5,821,394 - Pf6N2E2_5045 0.78 -0.9
5,821,432 + Pf6N2E2_5045 0.82 -0.4
5,821,432 + Pf6N2E2_5045 0.82 -1.7
5,821,432 + Pf6N2E2_5045 0.82 -0.6
5,821,432 + Pf6N2E2_5045 0.82 -0.7
5,821,433 - Pf6N2E2_5045 0.82 -0.0
5,821,433 - Pf6N2E2_5045 0.82 -2.3
5,821,433 - Pf6N2E2_5045 0.82 -1.2
5,821,433 - Pf6N2E2_5045 0.82 +0.1
5,821,433 - Pf6N2E2_5045 0.82 -0.3
5,821,433 - Pf6N2E2_5045 0.82 -0.7
5,821,433 - Pf6N2E2_5045 0.82 -0.9
5,821,433 - Pf6N2E2_5045 0.82 -1.7
5,821,438 + Pf6N2E2_5045 0.82 -1.2
5,821,438 + Pf6N2E2_5045 0.82 -1.1
5,821,438 + Pf6N2E2_5045 0.82 -1.1
5,821,439 - Pf6N2E2_5045 0.83 -2.0
5,821,439 - Pf6N2E2_5045 0.83 -1.9
5,821,439 - Pf6N2E2_5045 0.83 -1.7

Or see this region's nucleotide sequence