Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5042 and Pf6N2E2_5043 are separated by 21 nucleotides Pf6N2E2_5043 and Pf6N2E2_5044 are separated by 169 nucleotides Pf6N2E2_5044 and Pf6N2E2_5045 are separated by 161 nucleotides
Pf6N2E2_5042 - FIG00954572: hypothetical protein, at 5,818,798 to 5,819,277
_5042
Pf6N2E2_5043 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 5,819,299 to 5,819,910
_5043
Pf6N2E2_5044 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,820,080 to 5,820,532
_5044
Pf6N2E2_5045 - Permease of the drug/metabolite transporter (DMT) superfamily, at 5,820,694 to 5,821,596
_5045
Position (kb)
5820
5821 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5819.188 kb on + strand, within Pf6N2E2_5042 at 5819.908 kb on + strand at 5819.908 kb on + strand at 5819.909 kb on - strand at 5819.909 kb on - strand at 5819.909 kb on - strand at 5820.081 kb on + strand at 5820.081 kb on + strand at 5820.295 kb on - strand, within Pf6N2E2_5044 at 5820.384 kb on + strand, within Pf6N2E2_5044 at 5820.385 kb on - strand, within Pf6N2E2_5044 at 5820.457 kb on + strand, within Pf6N2E2_5044 at 5820.522 kb on + strand at 5820.523 kb on - strand at 5820.526 kb on + strand at 5820.526 kb on + strand at 5820.527 kb on - strand at 5820.527 kb on - strand at 5820.535 kb on - strand at 5820.535 kb on - strand at 5820.604 kb on + strand at 5820.615 kb on + strand at 5820.655 kb on + strand at 5820.655 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.748 kb on + strand at 5820.749 kb on - strand at 5820.749 kb on - strand at 5820.749 kb on - strand at 5820.749 kb on - strand at 5820.749 kb on - strand at 5820.749 kb on - strand at 5820.749 kb on - strand at 5820.749 kb on - strand at 5820.769 kb on + strand at 5820.770 kb on - strand at 5820.853 kb on + strand, within Pf6N2E2_5045 at 5820.853 kb on + strand, within Pf6N2E2_5045 at 5820.854 kb on - strand, within Pf6N2E2_5045 at 5820.854 kb on - strand, within Pf6N2E2_5045 at 5821.027 kb on - strand, within Pf6N2E2_5045 at 5821.060 kb on - strand, within Pf6N2E2_5045 at 5821.088 kb on + strand, within Pf6N2E2_5045 at 5821.089 kb on - strand, within Pf6N2E2_5045 at 5821.089 kb on - strand, within Pf6N2E2_5045 at 5821.166 kb on + strand, within Pf6N2E2_5045 at 5821.348 kb on + strand, within Pf6N2E2_5045 at 5821.387 kb on + strand, within Pf6N2E2_5045 at 5821.387 kb on + strand, within Pf6N2E2_5045 at 5821.387 kb on + strand, within Pf6N2E2_5045 at 5821.387 kb on + strand, within Pf6N2E2_5045 at 5821.387 kb on + strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.388 kb on - strand, within Pf6N2E2_5045 at 5821.393 kb on + strand, within Pf6N2E2_5045 at 5821.393 kb on + strand, within Pf6N2E2_5045 at 5821.393 kb on + strand, within Pf6N2E2_5045 at 5821.393 kb on + strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.394 kb on - strand, within Pf6N2E2_5045 at 5821.432 kb on + strand, within Pf6N2E2_5045 at 5821.432 kb on + strand, within Pf6N2E2_5045 at 5821.432 kb on + strand, within Pf6N2E2_5045 at 5821.432 kb on + strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.433 kb on - strand, within Pf6N2E2_5045 at 5821.438 kb on + strand, within Pf6N2E2_5045 at 5821.438 kb on + strand, within Pf6N2E2_5045 at 5821.438 kb on + strand, within Pf6N2E2_5045 at 5821.439 kb on - strand, within Pf6N2E2_5045 at 5821.439 kb on - strand, within Pf6N2E2_5045 at 5821.439 kb on - strand, within Pf6N2E2_5045
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,819,188 + Pf6N2E2_5042 0.81 +0.9 5,819,908 + -0.1 5,819,908 + -0.4 5,819,909 - -0.4 5,819,909 - -2.1 5,819,909 - -0.4 5,820,081 + -0.1 5,820,081 + +0.1 5,820,295 - Pf6N2E2_5044 0.47 -2.2 5,820,384 + Pf6N2E2_5044 0.67 +0.2 5,820,385 - Pf6N2E2_5044 0.67 -1.2 5,820,457 + Pf6N2E2_5044 0.83 +0.5 5,820,522 + +0.9 5,820,523 - -0.2 5,820,526 + +2.5 5,820,526 + +0.5 5,820,527 - -0.2 5,820,527 - +0.2 5,820,535 - -1.8 5,820,535 - -1.1 5,820,604 + -0.1 5,820,615 + +0.7 5,820,655 + +0.6 5,820,655 + -0.6 5,820,748 + -1.1 5,820,748 + -1.9 5,820,748 + -1.0 5,820,748 + -2.6 5,820,748 + -2.1 5,820,748 + -1.7 5,820,748 + -1.5 5,820,748 + -0.9 5,820,748 + -2.2 5,820,748 + -1.0 5,820,748 + -1.4 5,820,748 + -0.1 5,820,749 - -1.2 5,820,749 - -1.7 5,820,749 - -2.5 5,820,749 - -1.8 5,820,749 - -1.2 5,820,749 - -2.2 5,820,749 - -1.2 5,820,749 - -1.0 5,820,769 + -1.3 5,820,770 - -1.2 5,820,853 + Pf6N2E2_5045 0.18 -0.2 5,820,853 + Pf6N2E2_5045 0.18 -0.4 5,820,854 - Pf6N2E2_5045 0.18 -1.3 5,820,854 - Pf6N2E2_5045 0.18 -2.6 5,821,027 - Pf6N2E2_5045 0.37 -1.3 5,821,060 - Pf6N2E2_5045 0.41 -0.5 5,821,088 + Pf6N2E2_5045 0.44 -1.3 5,821,089 - Pf6N2E2_5045 0.44 -1.0 5,821,089 - Pf6N2E2_5045 0.44 -0.2 5,821,166 + Pf6N2E2_5045 0.52 -1.8 5,821,348 + Pf6N2E2_5045 0.72 -3.4 5,821,387 + Pf6N2E2_5045 0.77 -2.5 5,821,387 + Pf6N2E2_5045 0.77 -1.3 5,821,387 + Pf6N2E2_5045 0.77 -1.0 5,821,387 + Pf6N2E2_5045 0.77 -0.9 5,821,387 + Pf6N2E2_5045 0.77 -2.8 5,821,388 - Pf6N2E2_5045 0.77 -0.4 5,821,388 - Pf6N2E2_5045 0.77 -2.2 5,821,388 - Pf6N2E2_5045 0.77 -1.2 5,821,388 - Pf6N2E2_5045 0.77 -1.0 5,821,388 - Pf6N2E2_5045 0.77 -0.2 5,821,388 - Pf6N2E2_5045 0.77 -1.4 5,821,388 - Pf6N2E2_5045 0.77 -1.5 5,821,388 - Pf6N2E2_5045 0.77 -1.4 5,821,393 + Pf6N2E2_5045 0.77 -2.4 5,821,393 + Pf6N2E2_5045 0.77 -1.8 5,821,393 + Pf6N2E2_5045 0.77 -1.7 5,821,393 + Pf6N2E2_5045 0.77 -1.3 5,821,394 - Pf6N2E2_5045 0.78 -0.2 5,821,394 - Pf6N2E2_5045 0.78 -0.5 5,821,394 - Pf6N2E2_5045 0.78 +0.4 5,821,394 - Pf6N2E2_5045 0.78 -1.0 5,821,394 - Pf6N2E2_5045 0.78 -0.9 5,821,394 - Pf6N2E2_5045 0.78 -0.8 5,821,394 - Pf6N2E2_5045 0.78 -2.6 5,821,394 - Pf6N2E2_5045 0.78 -0.9 5,821,432 + Pf6N2E2_5045 0.82 -0.4 5,821,432 + Pf6N2E2_5045 0.82 -1.7 5,821,432 + Pf6N2E2_5045 0.82 -0.6 5,821,432 + Pf6N2E2_5045 0.82 -0.7 5,821,433 - Pf6N2E2_5045 0.82 -0.0 5,821,433 - Pf6N2E2_5045 0.82 -2.3 5,821,433 - Pf6N2E2_5045 0.82 -1.2 5,821,433 - Pf6N2E2_5045 0.82 +0.1 5,821,433 - Pf6N2E2_5045 0.82 -0.3 5,821,433 - Pf6N2E2_5045 0.82 -0.7 5,821,433 - Pf6N2E2_5045 0.82 -0.9 5,821,433 - Pf6N2E2_5045 0.82 -1.7 5,821,438 + Pf6N2E2_5045 0.82 -1.2 5,821,438 + Pf6N2E2_5045 0.82 -1.1 5,821,438 + Pf6N2E2_5045 0.82 -1.1 5,821,439 - Pf6N2E2_5045 0.83 -2.0 5,821,439 - Pf6N2E2_5045 0.83 -1.9 5,821,439 - Pf6N2E2_5045 0.83 -1.7
Or see this region's nucleotide sequence