Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_227 and Pf6N2E2_228 are separated by 21 nucleotides Pf6N2E2_228 and Pf6N2E2_229 are separated by 2 nucleotides
Pf6N2E2_227 - 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-), at 288,729 to 290,375
_227
Pf6N2E2_228 - Transcriptional regulator, IclR family, at 290,397 to 291,218
_228
Pf6N2E2_229 - Putative fumarylacetoacetate (FAA) hydrolase, at 291,221 to 292,072
_229
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1
2 at 289.489 kb on + strand, within Pf6N2E2_227 at 289.489 kb on + strand, within Pf6N2E2_227 at 289.574 kb on - strand, within Pf6N2E2_227 at 289.574 kb on - strand, within Pf6N2E2_227 at 289.574 kb on - strand, within Pf6N2E2_227 at 289.574 kb on - strand, within Pf6N2E2_227 at 289.750 kb on + strand, within Pf6N2E2_227 at 289.750 kb on + strand, within Pf6N2E2_227 at 289.888 kb on + strand, within Pf6N2E2_227 at 289.888 kb on + strand, within Pf6N2E2_227 at 289.889 kb on - strand, within Pf6N2E2_227 at 289.941 kb on + strand, within Pf6N2E2_227 at 289.942 kb on - strand, within Pf6N2E2_227 at 290.078 kb on - strand, within Pf6N2E2_227 at 290.134 kb on + strand, within Pf6N2E2_227 at 290.134 kb on + strand, within Pf6N2E2_227 at 290.134 kb on + strand, within Pf6N2E2_227 at 290.134 kb on + strand, within Pf6N2E2_227 at 290.135 kb on - strand, within Pf6N2E2_227 at 290.135 kb on - strand, within Pf6N2E2_227 at 290.135 kb on - strand, within Pf6N2E2_227 at 290.135 kb on - strand at 290.379 kb on + strand at 290.379 kb on + strand at 290.582 kb on - strand, within Pf6N2E2_228 at 290.618 kb on - strand, within Pf6N2E2_228 at 290.618 kb on - strand, within Pf6N2E2_228 at 290.618 kb on - strand, within Pf6N2E2_228 at 290.618 kb on - strand, within Pf6N2E2_228 at 290.618 kb on - strand, within Pf6N2E2_228 at 290.618 kb on - strand, within Pf6N2E2_228 at 290.801 kb on - strand, within Pf6N2E2_228 at 290.970 kb on - strand, within Pf6N2E2_228 at 290.993 kb on - strand, within Pf6N2E2_228 at 290.993 kb on - strand, within Pf6N2E2_228 at 291.208 kb on - strand at 291.208 kb on - strand at 291.208 kb on - strand at 291.208 kb on - strand at 291.208 kb on - strand at 291.208 kb on - strand at 291.208 kb on - strand at 291.223 kb on - strand at 291.607 kb on - strand, within Pf6N2E2_229 at 291.607 kb on - strand, within Pf6N2E2_229 at 291.607 kb on - strand, within Pf6N2E2_229 at 291.784 kb on - strand, within Pf6N2E2_229 at 291.826 kb on - strand, within Pf6N2E2_229 at 292.032 kb on + strand at 292.032 kb on + strand at 292.032 kb on + strand at 292.032 kb on + strand at 292.033 kb on - strand at 292.036 kb on + strand at 292.037 kb on - strand at 292.037 kb on - strand at 292.039 kb on + strand at 292.055 kb on - strand at 292.055 kb on - strand at 292.110 kb on - strand at 292.196 kb on - strand at 292.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 289,489 + Pf6N2E2_227 0.46 -0.5 289,489 + Pf6N2E2_227 0.46 +1.4 289,574 - Pf6N2E2_227 0.51 -0.5 289,574 - Pf6N2E2_227 0.51 -0.7 289,574 - Pf6N2E2_227 0.51 +0.5 289,574 - Pf6N2E2_227 0.51 +1.1 289,750 + Pf6N2E2_227 0.62 +1.9 289,750 + Pf6N2E2_227 0.62 +0.2 289,888 + Pf6N2E2_227 0.70 +0.8 289,888 + Pf6N2E2_227 0.70 +0.2 289,889 - Pf6N2E2_227 0.70 +1.6 289,941 + Pf6N2E2_227 0.74 +0.6 289,942 - Pf6N2E2_227 0.74 -0.2 290,078 - Pf6N2E2_227 0.82 -1.0 290,134 + Pf6N2E2_227 0.85 -0.0 290,134 + Pf6N2E2_227 0.85 -0.9 290,134 + Pf6N2E2_227 0.85 +0.7 290,134 + Pf6N2E2_227 0.85 +0.4 290,135 - Pf6N2E2_227 0.85 -0.3 290,135 - Pf6N2E2_227 0.85 +1.0 290,135 - Pf6N2E2_227 0.85 -0.0 290,135 - -2.3 290,379 + +0.1 290,379 + -0.6 290,582 - Pf6N2E2_228 0.23 +0.4 290,618 - Pf6N2E2_228 0.27 -0.0 290,618 - Pf6N2E2_228 0.27 +0.8 290,618 - Pf6N2E2_228 0.27 +1.4 290,618 - Pf6N2E2_228 0.27 +0.2 290,618 - Pf6N2E2_228 0.27 -1.8 290,618 - Pf6N2E2_228 0.27 -0.4 290,801 - Pf6N2E2_228 0.49 +1.1 290,970 - Pf6N2E2_228 0.70 -0.4 290,993 - Pf6N2E2_228 0.73 +1.1 290,993 - Pf6N2E2_228 0.73 +0.6 291,208 - +0.9 291,208 - -0.8 291,208 - +0.4 291,208 - -1.4 291,208 - +2.1 291,208 - +0.1 291,208 - -1.0 291,223 - +0.1 291,607 - Pf6N2E2_229 0.45 +0.8 291,607 - Pf6N2E2_229 0.45 +0.6 291,607 - Pf6N2E2_229 0.45 -0.8 291,784 - Pf6N2E2_229 0.66 -1.3 291,826 - Pf6N2E2_229 0.71 +0.3 292,032 + -1.5 292,032 + +0.4 292,032 + -0.8 292,032 + -0.0 292,033 - -0.1 292,036 + +0.4 292,037 - +0.7 292,037 - +1.1 292,039 + -0.3 292,055 - +0.2 292,055 - -0.6 292,110 - +1.6 292,196 - +1.3 292,196 - -0.6
Or see this region's nucleotide sequence