Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_956 and HP15_957 are separated by 130 nucleotides HP15_957 and HP15_958 are separated by 26 nucleotides HP15_958 and HP15_959 are separated by 97 nucleotides
HP15_956: HP15_956 - short chain fatty acid transporter, at 972,798 to 973,187
_956
HP15_957: HP15_957 - GDSL-like lipase/acylhydrolase domain protein, at 973,318 to 974,031
_957
HP15_958: HP15_958 - small multidrug resistance protein, at 974,058 to 974,390
_958
HP15_959: HP15_959 - conserved hypothetical protein, at 974,488 to 975,513
_959
Position (kb) 974
975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 973.060 kb on + strand, within HP15_956 at 973.135 kb on - strand, within HP15_956 at 973.149 kb on + strand at 973.203 kb on + strand at 973.289 kb on - strand at 973.435 kb on - strand, within HP15_957 at 973.486 kb on - strand, within HP15_957 at 973.543 kb on - strand, within HP15_957 at 973.603 kb on + strand, within HP15_957 at 973.613 kb on + strand, within HP15_957 at 973.676 kb on - strand, within HP15_957 at 973.777 kb on + strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.826 kb on + strand, within HP15_957 at 973.846 kb on + strand, within HP15_957 at 973.882 kb on - strand, within HP15_957 at 973.950 kb on + strand, within HP15_957 at 973.977 kb on + strand at 973.996 kb on + strand at 973.996 kb on + strand at 974.001 kb on + strand at 974.004 kb on - strand at 974.093 kb on + strand, within HP15_958 at 974.117 kb on - strand, within HP15_958 at 974.139 kb on + strand, within HP15_958 at 974.214 kb on + strand, within HP15_958 at 974.222 kb on - strand, within HP15_958 at 974.291 kb on + strand, within HP15_958 at 974.315 kb on - strand, within HP15_958 at 974.430 kb on - strand at 974.448 kb on - strand at 974.485 kb on + strand at 974.485 kb on + strand at 974.493 kb on - strand at 974.503 kb on - strand at 974.559 kb on - strand at 974.605 kb on + strand, within HP15_959 at 974.659 kb on - strand, within HP15_959 at 974.689 kb on - strand, within HP15_959 at 974.744 kb on + strand, within HP15_959 at 974.751 kb on + strand, within HP15_959 at 974.834 kb on + strand, within HP15_959 at 974.837 kb on - strand, within HP15_959 at 975.006 kb on + strand, within HP15_959 at 975.012 kb on + strand, within HP15_959 at 975.016 kb on + strand, within HP15_959 at 975.140 kb on - strand, within HP15_959 at 975.301 kb on + strand, within HP15_959 at 975.310 kb on - strand, within HP15_959
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 973,060 + HP15_956 0.67 -0.6 973,135 - HP15_956 0.86 +0.4 973,149 + -1.7 973,203 + -0.3 973,289 - -0.4 973,435 - HP15_957 0.16 +0.3 973,486 - HP15_957 0.24 -1.2 973,543 - HP15_957 0.32 -0.1 973,603 + HP15_957 0.40 -2.8 973,613 + HP15_957 0.41 -2.4 973,676 - HP15_957 0.50 -0.2 973,777 + HP15_957 0.64 -3.1 973,785 - HP15_957 0.65 -0.4 973,785 - HP15_957 0.65 -0.2 973,785 - HP15_957 0.65 -0.5 973,826 + HP15_957 0.71 -3.4 973,846 + HP15_957 0.74 -3.1 973,882 - HP15_957 0.79 -2.1 973,950 + HP15_957 0.89 -3.1 973,977 + -1.9 973,996 + -3.3 973,996 + -3.6 974,001 + -3.9 974,004 - -1.9 974,093 + HP15_958 0.11 -4.3 974,117 - HP15_958 0.18 -4.6 974,139 + HP15_958 0.24 -3.4 974,214 + HP15_958 0.47 -3.4 974,222 - HP15_958 0.49 -1.6 974,291 + HP15_958 0.70 -4.0 974,315 - HP15_958 0.77 -3.8 974,430 - -0.4 974,448 - +2.4 974,485 + +1.7 974,485 + +1.8 974,493 - +2.6 974,503 - +1.8 974,559 - +1.3 974,605 + HP15_959 0.11 -0.3 974,659 - HP15_959 0.17 +0.7 974,689 - HP15_959 0.20 -0.2 974,744 + HP15_959 0.25 -0.8 974,751 + HP15_959 0.26 +0.3 974,834 + HP15_959 0.34 -0.8 974,837 - HP15_959 0.34 -1.0 975,006 + HP15_959 0.50 +0.2 975,012 + HP15_959 0.51 +0.1 975,016 + HP15_959 0.51 +1.2 975,140 - HP15_959 0.64 +0.3 975,301 + HP15_959 0.79 +0.7 975,310 - HP15_959 0.80 +1.4
Or see this region's nucleotide sequence