Strain Fitness in Marinobacter adhaerens HP15 around HP15_863

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_862 and HP15_863 are separated by 142 nucleotidesHP15_863 and HP15_864 are separated by 138 nucleotides HP15_862: HP15_862 - signal transduction protein containing a membrane domain, an EAL and a GGDEF domain, at 880,993 to 884,754 _862 HP15_863: HP15_863 - ribonuclease Z, at 884,897 to 885,868 _863 HP15_864: HP15_864 - enoyl-CoA hydratase/isomerase family protein, at 886,007 to 886,852 _864 Position (kb) 884 885 886Strain fitness (log2 ratio) -2 -1 0 1 2at 883.897 kb on - strand, within HP15_862at 883.902 kb on + strand, within HP15_862at 883.920 kb on - strand, within HP15_862at 883.920 kb on - strand, within HP15_862at 883.942 kb on + strand, within HP15_862at 883.945 kb on + strand, within HP15_862at 884.151 kb on + strand, within HP15_862at 884.151 kb on + strand, within HP15_862at 884.171 kb on + strand, within HP15_862at 884.179 kb on - strand, within HP15_862at 884.252 kb on + strand, within HP15_862at 884.270 kb on - strand, within HP15_862at 884.270 kb on - strand, within HP15_862at 884.295 kb on + strand, within HP15_862at 884.386 kb on - strandat 884.466 kb on - strandat 884.473 kb on - strandat 884.497 kb on + strandat 884.579 kb on - strandat 884.653 kb on - strandat 884.653 kb on - strandat 884.677 kb on + strandat 884.685 kb on + strandat 884.733 kb on + strandat 884.741 kb on - strandat 884.743 kb on + strandat 884.771 kb on - strandat 884.946 kb on - strandat 885.013 kb on - strand, within HP15_863at 885.069 kb on - strand, within HP15_863at 885.120 kb on + strand, within HP15_863at 885.137 kb on + strand, within HP15_863at 885.210 kb on + strand, within HP15_863at 885.341 kb on - strand, within HP15_863at 885.381 kb on + strand, within HP15_863at 885.386 kb on + strand, within HP15_863at 885.394 kb on - strand, within HP15_863at 885.460 kb on - strand, within HP15_863at 885.461 kb on - strand, within HP15_863at 885.500 kb on + strand, within HP15_863at 885.552 kb on + strand, within HP15_863at 885.613 kb on - strand, within HP15_863at 885.613 kb on - strand, within HP15_863at 885.628 kb on + strand, within HP15_863at 885.761 kb on + strand, within HP15_863at 885.786 kb on - strandat 885.868 kb on + strandat 885.908 kb on + strandat 885.912 kb on + strandat 885.913 kb on + strandat 886.087 kb on - strandat 886.117 kb on + strand, within HP15_864at 886.130 kb on - strand, within HP15_864at 886.222 kb on - strand, within HP15_864at 886.281 kb on + strand, within HP15_864at 886.304 kb on + strand, within HP15_864at 886.423 kb on - strand, within HP15_864at 886.522 kb on + strand, within HP15_864at 886.615 kb on + strand, within HP15_864at 886.694 kb on + strand, within HP15_864at 886.706 kb on + strand, within HP15_864at 886.714 kb on - strand, within HP15_864at 886.714 kb on - strand, within HP15_864at 886.716 kb on + strand, within HP15_864at 886.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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883,897 - HP15_862 0.77 -1.3
883,902 + HP15_862 0.77 -1.4
883,920 - HP15_862 0.78 +0.9
883,920 - HP15_862 0.78 +0.3
883,942 + HP15_862 0.78 -1.1
883,945 + HP15_862 0.78 -0.7
884,151 + HP15_862 0.84 -0.3
884,151 + HP15_862 0.84 +0.1
884,171 + HP15_862 0.84 +1.0
884,179 - HP15_862 0.85 -1.9
884,252 + HP15_862 0.87 -0.9
884,270 - HP15_862 0.87 +0.6
884,270 - HP15_862 0.87 -1.2
884,295 + HP15_862 0.88 -1.4
884,386 - +0.2
884,466 - -0.6
884,473 - -0.3
884,497 + +0.9
884,579 - +0.7
884,653 - -0.0
884,653 - -0.2
884,677 + -2.6
884,685 + -0.3
884,733 + +0.3
884,741 - +0.5
884,743 + -1.0
884,771 - -1.3
884,946 - +1.4
885,013 - HP15_863 0.12 -0.2
885,069 - HP15_863 0.18 -1.6
885,120 + HP15_863 0.23 -1.2
885,137 + HP15_863 0.25 +0.0
885,210 + HP15_863 0.32 +0.3
885,341 - HP15_863 0.46 +1.0
885,381 + HP15_863 0.50 -1.7
885,386 + HP15_863 0.50 +0.8
885,394 - HP15_863 0.51 -1.5
885,460 - HP15_863 0.58 +0.9
885,461 - HP15_863 0.58 +1.6
885,500 + HP15_863 0.62 +0.2
885,552 + HP15_863 0.67 +0.2
885,613 - HP15_863 0.74 +1.8
885,613 - HP15_863 0.74 +0.6
885,628 + HP15_863 0.75 -1.0
885,761 + HP15_863 0.89 +0.8
885,786 - +0.2
885,868 + -0.4
885,908 + -0.6
885,912 + +0.8
885,913 + +0.7
886,087 - +0.5
886,117 + HP15_864 0.13 +0.3
886,130 - HP15_864 0.15 +0.1
886,222 - HP15_864 0.25 +0.4
886,281 + HP15_864 0.32 -2.2
886,304 + HP15_864 0.35 -0.2
886,423 - HP15_864 0.49 -1.3
886,522 + HP15_864 0.61 -1.8
886,615 + HP15_864 0.72 -1.6
886,694 + HP15_864 0.81 +0.2
886,706 + HP15_864 0.83 -0.1
886,714 - HP15_864 0.84 +0.4
886,714 - HP15_864 0.84 -1.8
886,716 + HP15_864 0.84 -0.6
886,790 + -1.9

Or see this region's nucleotide sequence