Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_862 and HP15_863 are separated by 142 nucleotides HP15_863 and HP15_864 are separated by 138 nucleotides
HP15_862: HP15_862 - signal transduction protein containing a membrane domain, an EAL and a GGDEF domain, at 880,993 to 884,754
_862
HP15_863: HP15_863 - ribonuclease Z, at 884,897 to 885,868
_863
HP15_864: HP15_864 - enoyl-CoA hydratase/isomerase family protein, at 886,007 to 886,852
_864
Position (kb)
884
885
886 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 883.897 kb on - strand, within HP15_862 at 883.902 kb on + strand, within HP15_862 at 883.920 kb on - strand, within HP15_862 at 883.920 kb on - strand, within HP15_862 at 883.942 kb on + strand, within HP15_862 at 883.945 kb on + strand, within HP15_862 at 884.151 kb on + strand, within HP15_862 at 884.151 kb on + strand, within HP15_862 at 884.171 kb on + strand, within HP15_862 at 884.179 kb on - strand, within HP15_862 at 884.252 kb on + strand, within HP15_862 at 884.270 kb on - strand, within HP15_862 at 884.270 kb on - strand, within HP15_862 at 884.295 kb on + strand, within HP15_862 at 884.386 kb on - strand at 884.466 kb on - strand at 884.473 kb on - strand at 884.497 kb on + strand at 884.579 kb on - strand at 884.653 kb on - strand at 884.653 kb on - strand at 884.677 kb on + strand at 884.685 kb on + strand at 884.733 kb on + strand at 884.741 kb on - strand at 884.743 kb on + strand at 884.771 kb on - strand at 884.946 kb on - strand at 885.013 kb on - strand, within HP15_863 at 885.069 kb on - strand, within HP15_863 at 885.120 kb on + strand, within HP15_863 at 885.137 kb on + strand, within HP15_863 at 885.210 kb on + strand, within HP15_863 at 885.341 kb on - strand, within HP15_863 at 885.381 kb on + strand, within HP15_863 at 885.386 kb on + strand, within HP15_863 at 885.394 kb on - strand, within HP15_863 at 885.460 kb on - strand, within HP15_863 at 885.461 kb on - strand, within HP15_863 at 885.500 kb on + strand, within HP15_863 at 885.552 kb on + strand, within HP15_863 at 885.613 kb on - strand, within HP15_863 at 885.613 kb on - strand, within HP15_863 at 885.628 kb on + strand, within HP15_863 at 885.761 kb on + strand, within HP15_863 at 885.786 kb on - strand at 885.868 kb on + strand at 885.908 kb on + strand at 885.912 kb on + strand at 885.913 kb on + strand at 886.087 kb on - strand at 886.117 kb on + strand, within HP15_864 at 886.130 kb on - strand, within HP15_864 at 886.222 kb on - strand, within HP15_864 at 886.281 kb on + strand, within HP15_864 at 886.304 kb on + strand, within HP15_864 at 886.423 kb on - strand, within HP15_864 at 886.522 kb on + strand, within HP15_864 at 886.615 kb on + strand, within HP15_864 at 886.694 kb on + strand, within HP15_864 at 886.706 kb on + strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.716 kb on + strand, within HP15_864 at 886.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 883,897 - HP15_862 0.77 -1.3 883,902 + HP15_862 0.77 -1.4 883,920 - HP15_862 0.78 +0.9 883,920 - HP15_862 0.78 +0.3 883,942 + HP15_862 0.78 -1.1 883,945 + HP15_862 0.78 -0.7 884,151 + HP15_862 0.84 -0.3 884,151 + HP15_862 0.84 +0.1 884,171 + HP15_862 0.84 +1.0 884,179 - HP15_862 0.85 -1.9 884,252 + HP15_862 0.87 -0.9 884,270 - HP15_862 0.87 +0.6 884,270 - HP15_862 0.87 -1.2 884,295 + HP15_862 0.88 -1.4 884,386 - +0.2 884,466 - -0.6 884,473 - -0.3 884,497 + +0.9 884,579 - +0.7 884,653 - -0.0 884,653 - -0.2 884,677 + -2.6 884,685 + -0.3 884,733 + +0.3 884,741 - +0.5 884,743 + -1.0 884,771 - -1.3 884,946 - +1.4 885,013 - HP15_863 0.12 -0.2 885,069 - HP15_863 0.18 -1.6 885,120 + HP15_863 0.23 -1.2 885,137 + HP15_863 0.25 +0.0 885,210 + HP15_863 0.32 +0.3 885,341 - HP15_863 0.46 +1.0 885,381 + HP15_863 0.50 -1.7 885,386 + HP15_863 0.50 +0.8 885,394 - HP15_863 0.51 -1.5 885,460 - HP15_863 0.58 +0.9 885,461 - HP15_863 0.58 +1.6 885,500 + HP15_863 0.62 +0.2 885,552 + HP15_863 0.67 +0.2 885,613 - HP15_863 0.74 +1.8 885,613 - HP15_863 0.74 +0.6 885,628 + HP15_863 0.75 -1.0 885,761 + HP15_863 0.89 +0.8 885,786 - +0.2 885,868 + -0.4 885,908 + -0.6 885,912 + +0.8 885,913 + +0.7 886,087 - +0.5 886,117 + HP15_864 0.13 +0.3 886,130 - HP15_864 0.15 +0.1 886,222 - HP15_864 0.25 +0.4 886,281 + HP15_864 0.32 -2.2 886,304 + HP15_864 0.35 -0.2 886,423 - HP15_864 0.49 -1.3 886,522 + HP15_864 0.61 -1.8 886,615 + HP15_864 0.72 -1.6 886,694 + HP15_864 0.81 +0.2 886,706 + HP15_864 0.83 -0.1 886,714 - HP15_864 0.84 +0.4 886,714 - HP15_864 0.84 -1.8 886,716 + HP15_864 0.84 -0.6 886,790 + -1.9
Or see this region's nucleotide sequence