Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g92 and HP15_p187g93 are separated by 182 nucleotides HP15_p187g93 and HP15_p187g94 are separated by 193 nucleotides HP15_p187g94 and HP15_p187g95 are separated by 2 nucleotides HP15_p187g95 and HP15_p187g96 are separated by 154 nucleotides HP15_p187g96 and HP15_p187g97 are separated by 12 nucleotides
HP15_p187g92: HP15_p187g92 - hypothetical protein, at 89,038 to 89,142
_p187g92
HP15_p187g93: HP15_p187g93 - transcriptional activator RfaH, at 89,325 to 89,762
_p187g93
HP15_p187g94: HP15_p187g94 - radical SAM domain protein, at 89,956 to 91,000
_p187g94
HP15_p187g95: HP15_p187g95 - hypothetical protein, at 91,003 to 91,122
_p187g95
HP15_p187g96: HP15_p187g96 - hypothetical protein, at 91,277 to 91,423
_p187g96
HP15_p187g97: HP15_p187g97 - sodium/solute symporter-like protein, at 91,436 to 92,797
_p187g97
Position (kb) 89
90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.981 kb on + strand at 88.981 kb on + strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.994 kb on + strand at 89.067 kb on + strand, within HP15_p187g92 at 89.074 kb on - strand, within HP15_p187g92 at 89.095 kb on - strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.107 kb on - strand, within HP15_p187g92 at 89.143 kb on + strand at 89.147 kb on + strand at 89.203 kb on - strand at 89.206 kb on + strand at 89.213 kb on + strand at 89.219 kb on - strand at 89.220 kb on + strand at 89.243 kb on - strand at 89.256 kb on - strand at 89.290 kb on - strand at 89.337 kb on + strand at 89.383 kb on + strand, within HP15_p187g93 at 89.393 kb on + strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.414 kb on - strand, within HP15_p187g93 at 89.422 kb on + strand, within HP15_p187g93 at 89.451 kb on - strand, within HP15_p187g93 at 89.482 kb on + strand, within HP15_p187g93 at 89.501 kb on - strand, within HP15_p187g93 at 89.505 kb on + strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.603 kb on + strand, within HP15_p187g93 at 89.669 kb on + strand, within HP15_p187g93 at 89.676 kb on - strand, within HP15_p187g93 at 89.698 kb on - strand, within HP15_p187g93 at 89.782 kb on + strand at 89.782 kb on + strand at 89.782 kb on + strand at 89.785 kb on - strand at 89.785 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.836 kb on - strand at 89.914 kb on + strand at 89.916 kb on + strand at 89.941 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.973 kb on + strand at 90.024 kb on + strand at 90.032 kb on - strand at 90.044 kb on + strand at 90.111 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.167 kb on - strand, within HP15_p187g94 at 90.167 kb on - strand, within HP15_p187g94 at 90.176 kb on - strand, within HP15_p187g94 at 90.292 kb on + strand, within HP15_p187g94 at 90.305 kb on + strand, within HP15_p187g94 at 90.395 kb on + strand, within HP15_p187g94 at 90.395 kb on + strand, within HP15_p187g94 at 90.400 kb on + strand, within HP15_p187g94 at 90.426 kb on + strand, within HP15_p187g94 at 90.444 kb on + strand, within HP15_p187g94 at 90.474 kb on - strand, within HP15_p187g94 at 90.499 kb on + strand, within HP15_p187g94 at 90.499 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.689 kb on + strand, within HP15_p187g94 at 90.697 kb on - strand, within HP15_p187g94 at 90.713 kb on + strand, within HP15_p187g94 at 90.715 kb on + strand, within HP15_p187g94 at 90.727 kb on - strand, within HP15_p187g94 at 90.744 kb on + strand, within HP15_p187g94 at 90.762 kb on + strand, within HP15_p187g94 at 90.763 kb on - strand, within HP15_p187g94 at 90.763 kb on - strand, within HP15_p187g94 at 90.765 kb on + strand, within HP15_p187g94 at 90.808 kb on - strand, within HP15_p187g94 at 90.813 kb on + strand, within HP15_p187g94 at 90.813 kb on + strand, within HP15_p187g94 at 90.821 kb on - strand, within HP15_p187g94 at 90.832 kb on + strand, within HP15_p187g94 at 90.862 kb on - strand, within HP15_p187g94 at 90.879 kb on - strand, within HP15_p187g94 at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.916 kb on + strand at 90.918 kb on + strand at 90.918 kb on + strand at 90.918 kb on + strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.924 kb on - strand at 90.926 kb on - strand at 90.926 kb on - strand at 90.960 kb on - strand at 91.293 kb on + strand, within HP15_p187g96 at 91.376 kb on + strand, within HP15_p187g96 at 91.397 kb on - strand, within HP15_p187g96 at 91.459 kb on + strand at 91.459 kb on + strand at 91.459 kb on + strand at 91.459 kb on + strand at 91.485 kb on + strand at 91.485 kb on + strand at 91.485 kb on - strand at 91.490 kb on + strand at 91.498 kb on - strand at 91.498 kb on - strand at 91.553 kb on - strand at 91.553 kb on - strand at 91.555 kb on + strand at 91.555 kb on + strand at 91.558 kb on - strand at 91.563 kb on - strand at 91.576 kb on - strand, within HP15_p187g97 at 91.576 kb on - strand, within HP15_p187g97 at 91.667 kb on + strand, within HP15_p187g97 at 91.672 kb on + strand, within HP15_p187g97 at 91.801 kb on - strand, within HP15_p187g97 at 91.856 kb on + strand, within HP15_p187g97 at 91.884 kb on + strand, within HP15_p187g97 at 91.922 kb on + strand, within HP15_p187g97 at 91.933 kb on + strand, within HP15_p187g97 at 91.941 kb on - strand, within HP15_p187g97 at 91.951 kb on - strand, within HP15_p187g97 at 91.953 kb on + strand, within HP15_p187g97 at 91.977 kb on + strand, within HP15_p187g97 at 91.990 kb on - strand, within HP15_p187g97 at 91.990 kb on - strand, within HP15_p187g97
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 88,981 + -1.3 88,981 + +0.1 88,989 - +0.7 88,989 - +1.4 88,989 - -1.3 88,994 + -1.6 89,067 + HP15_p187g92 0.28 -1.5 89,074 - HP15_p187g92 0.34 +0.2 89,095 - HP15_p187g92 0.54 -1.9 89,099 + HP15_p187g92 0.58 +0.6 89,099 + HP15_p187g92 0.58 +0.7 89,107 - HP15_p187g92 0.66 +0.4 89,143 + -1.4 89,147 + -0.1 89,203 - +0.3 89,206 + -0.9 89,213 + -0.2 89,219 - -1.7 89,220 + +0.7 89,243 - +0.8 89,256 - +0.6 89,290 - -2.9 89,337 + -1.2 89,383 + HP15_p187g93 0.13 +0.4 89,393 + HP15_p187g93 0.16 +0.8 89,401 - HP15_p187g93 0.17 -1.3 89,401 - HP15_p187g93 0.17 -0.6 89,414 - HP15_p187g93 0.20 +0.5 89,422 + HP15_p187g93 0.22 -1.6 89,451 - HP15_p187g93 0.29 -0.0 89,482 + HP15_p187g93 0.36 -0.5 89,501 - HP15_p187g93 0.40 +0.4 89,505 + HP15_p187g93 0.41 +2.0 89,554 - HP15_p187g93 0.52 +1.1 89,554 - HP15_p187g93 0.52 +0.1 89,603 + HP15_p187g93 0.63 +0.6 89,669 + HP15_p187g93 0.79 -1.4 89,676 - HP15_p187g93 0.80 +0.4 89,698 - HP15_p187g93 0.85 -0.1 89,782 + -0.5 89,782 + -1.4 89,782 + +1.7 89,785 - -0.9 89,785 - +0.9 89,790 - -0.1 89,790 - -0.3 89,790 - +1.6 89,823 + -0.6 89,823 + -0.4 89,823 + +0.7 89,836 - -0.2 89,914 + +0.1 89,916 + +0.3 89,941 + +1.2 89,951 + +0.2 89,951 + -0.1 89,951 + -1.6 89,951 + -1.6 89,951 + +0.1 89,959 - +0.5 89,959 - +0.4 89,959 - -1.6 89,959 - -0.2 89,959 - -0.2 89,959 - +0.1 89,959 - -0.3 89,973 + +0.9 90,024 + -0.5 90,032 - -0.1 90,044 + -0.1 90,111 + HP15_p187g94 0.15 -0.2 90,138 + HP15_p187g94 0.17 +1.4 90,138 + HP15_p187g94 0.17 +0.2 90,138 + HP15_p187g94 0.17 -1.6 90,138 + HP15_p187g94 0.17 -0.5 90,167 - HP15_p187g94 0.20 -0.9 90,167 - HP15_p187g94 0.20 -1.6 90,176 - HP15_p187g94 0.21 +0.4 90,292 + HP15_p187g94 0.32 -1.3 90,305 + HP15_p187g94 0.33 +0.3 90,395 + HP15_p187g94 0.42 +0.1 90,395 + HP15_p187g94 0.42 +1.0 90,400 + HP15_p187g94 0.42 +0.9 90,426 + HP15_p187g94 0.45 +0.2 90,444 + HP15_p187g94 0.47 -1.0 90,474 - HP15_p187g94 0.50 -2.2 90,499 + HP15_p187g94 0.52 -2.0 90,499 - HP15_p187g94 0.52 +0.1 90,596 - HP15_p187g94 0.61 -0.1 90,596 - HP15_p187g94 0.61 -0.3 90,596 - HP15_p187g94 0.61 -1.6 90,596 - HP15_p187g94 0.61 -0.4 90,689 + HP15_p187g94 0.70 -0.7 90,697 - HP15_p187g94 0.71 +0.2 90,713 + HP15_p187g94 0.72 +0.2 90,715 + HP15_p187g94 0.73 -0.1 90,727 - HP15_p187g94 0.74 -1.0 90,744 + HP15_p187g94 0.75 -1.8 90,762 + HP15_p187g94 0.77 +0.4 90,763 - HP15_p187g94 0.77 +0.2 90,763 - HP15_p187g94 0.77 +0.4 90,765 + HP15_p187g94 0.77 +0.4 90,808 - HP15_p187g94 0.82 -1.2 90,813 + HP15_p187g94 0.82 +0.2 90,813 + HP15_p187g94 0.82 -0.8 90,821 - HP15_p187g94 0.83 +0.8 90,832 + HP15_p187g94 0.84 +0.2 90,862 - HP15_p187g94 0.87 -0.8 90,879 - HP15_p187g94 0.88 -0.9 90,916 + +0.4 90,916 + +0.3 90,916 + -0.2 90,916 + +0.7 90,916 + +0.1 90,916 + +0.5 90,918 + -1.5 90,918 + +0.5 90,918 + -0.8 90,924 - +0.5 90,924 - -0.5 90,924 - -1.3 90,924 - +0.5 90,924 - -1.5 90,924 - -0.9 90,924 - -0.9 90,924 - +0.7 90,926 - -1.3 90,926 - +0.3 90,960 - +0.6 91,293 + HP15_p187g96 0.11 +1.5 91,376 + HP15_p187g96 0.67 -0.5 91,397 - HP15_p187g96 0.82 -0.9 91,459 + -1.1 91,459 + +1.7 91,459 + -0.7 91,459 + +0.4 91,485 + +0.0 91,485 + +0.7 91,485 - -0.9 91,490 + +0.6 91,498 - -1.1 91,498 - +1.3 91,553 - -0.3 91,553 - -0.7 91,555 + +0.3 91,555 + -0.4 91,558 - +0.2 91,563 - -2.1 91,576 - HP15_p187g97 0.10 -0.1 91,576 - HP15_p187g97 0.10 -0.4 91,667 + HP15_p187g97 0.17 +0.8 91,672 + HP15_p187g97 0.17 +0.3 91,801 - HP15_p187g97 0.27 +0.4 91,856 + HP15_p187g97 0.31 +2.2 91,884 + HP15_p187g97 0.33 -0.3 91,922 + HP15_p187g97 0.36 -2.3 91,933 + HP15_p187g97 0.36 +0.4 91,941 - HP15_p187g97 0.37 +2.4 91,951 - HP15_p187g97 0.38 +0.7 91,953 + HP15_p187g97 0.38 +0.4 91,977 + HP15_p187g97 0.40 -0.8 91,990 - HP15_p187g97 0.41 +0.8 91,990 - HP15_p187g97 0.41 +0.9
Or see this region's nucleotide sequence