Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g35

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g34 and HP15_p187g35 are separated by 475 nucleotidesHP15_p187g35 and HP15_p187g36 are separated by 104 nucleotidesHP15_p187g36 and HP15_p187g37 are separated by 44 nucleotides HP15_p187g34: HP15_p187g34 - uncharacterized conserved protein, HipA-like protein, at 26,119 to 27,468 _p187g34 HP15_p187g35: HP15_p187g35 - hypothetical protein, at 27,944 to 28,771 _p187g35 HP15_p187g36: HP15_p187g36 - hypothetical protein, at 28,876 to 29,406 _p187g36 HP15_p187g37: HP15_p187g37 - integral membrane protein, transporter, at 29,451 to 31,496 _p187g37 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 27.019 kb on + strand, within HP15_p187g34at 27.033 kb on + strand, within HP15_p187g34at 27.033 kb on + strand, within HP15_p187g34at 27.045 kb on + strand, within HP15_p187g34at 27.085 kb on + strand, within HP15_p187g34at 27.085 kb on + strand, within HP15_p187g34at 27.085 kb on + strand, within HP15_p187g34at 27.179 kb on + strand, within HP15_p187g34at 27.185 kb on + strand, within HP15_p187g34at 27.192 kb on + strand, within HP15_p187g34at 27.357 kb on + strandat 27.372 kb on + strandat 27.456 kb on + strandat 27.470 kb on + strandat 27.487 kb on + strandat 27.487 kb on + strandat 27.769 kb on - strandat 27.817 kb on + strandat 27.839 kb on + strandat 27.850 kb on + strandat 27.851 kb on - strandat 27.874 kb on + strandat 27.882 kb on - strandat 27.932 kb on - strandat 27.937 kb on - strandat 28.052 kb on - strand, within HP15_p187g35at 28.052 kb on - strand, within HP15_p187g35at 28.117 kb on - strand, within HP15_p187g35at 28.120 kb on + strand, within HP15_p187g35at 28.151 kb on - strand, within HP15_p187g35at 28.165 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.195 kb on - strand, within HP15_p187g35at 28.195 kb on - strand, within HP15_p187g35at 28.195 kb on - strand, within HP15_p187g35at 28.213 kb on + strand, within HP15_p187g35at 28.245 kb on - strand, within HP15_p187g35at 28.280 kb on + strand, within HP15_p187g35at 28.438 kb on + strand, within HP15_p187g35at 28.442 kb on + strand, within HP15_p187g35at 28.446 kb on - strand, within HP15_p187g35at 28.446 kb on - strand, within HP15_p187g35at 28.446 kb on - strand, within HP15_p187g35at 28.450 kb on - strand, within HP15_p187g35at 28.581 kb on - strand, within HP15_p187g35at 28.623 kb on + strand, within HP15_p187g35at 28.631 kb on - strand, within HP15_p187g35at 28.645 kb on + strand, within HP15_p187g35at 28.693 kb on - strandat 28.693 kb on - strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.774 kb on - strandat 28.774 kb on - strandat 28.774 kb on - strandat 28.793 kb on - strandat 28.858 kb on + strandat 28.873 kb on + strandat 28.881 kb on - strandat 28.943 kb on + strand, within HP15_p187g36at 28.943 kb on + strand, within HP15_p187g36at 28.951 kb on - strand, within HP15_p187g36at 29.014 kb on - strand, within HP15_p187g36at 29.084 kb on + strand, within HP15_p187g36at 29.092 kb on - strand, within HP15_p187g36at 29.094 kb on + strand, within HP15_p187g36at 29.107 kb on + strand, within HP15_p187g36at 29.107 kb on + strand, within HP15_p187g36at 29.108 kb on + strand, within HP15_p187g36at 29.110 kb on - strand, within HP15_p187g36at 29.145 kb on + strand, within HP15_p187g36at 29.153 kb on - strand, within HP15_p187g36at 29.153 kb on - strand, within HP15_p187g36at 29.252 kb on - strand, within HP15_p187g36at 29.271 kb on + strand, within HP15_p187g36at 29.318 kb on + strand, within HP15_p187g36at 29.318 kb on + strand, within HP15_p187g36at 29.326 kb on - strand, within HP15_p187g36at 29.326 kb on - strand, within HP15_p187g36at 29.326 kb on - strand, within HP15_p187g36at 29.388 kb on + strandat 29.448 kb on + strandat 29.448 kb on + strandat 29.456 kb on - strandat 29.461 kb on + strandat 29.469 kb on - strandat 29.487 kb on + strandat 29.512 kb on - strandat 29.662 kb on - strand, within HP15_p187g37at 29.662 kb on - strand, within HP15_p187g37at 29.741 kb on + strand, within HP15_p187g37

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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27,019 + HP15_p187g34 0.67 -0.9
27,033 + HP15_p187g34 0.68 +0.4
27,033 + HP15_p187g34 0.68 -0.5
27,045 + HP15_p187g34 0.69 -1.2
27,085 + HP15_p187g34 0.72 -2.2
27,085 + HP15_p187g34 0.72 -0.3
27,085 + HP15_p187g34 0.72 -0.9
27,179 + HP15_p187g34 0.79 -0.9
27,185 + HP15_p187g34 0.79 +1.2
27,192 + HP15_p187g34 0.79 +1.2
27,357 + +0.3
27,372 + -1.0
27,456 + +0.9
27,470 + +0.1
27,487 + -0.6
27,487 + -0.1
27,769 - +0.7
27,817 + -1.3
27,839 + -1.5
27,850 + +0.3
27,851 - +0.5
27,874 + -1.0
27,882 - -2.0
27,932 - +0.2
27,937 - -1.7
28,052 - HP15_p187g35 0.13 +0.6
28,052 - HP15_p187g35 0.13 +0.3
28,117 - HP15_p187g35 0.21 +0.9
28,120 + HP15_p187g35 0.21 +0.3
28,151 - HP15_p187g35 0.25 -0.5
28,165 + HP15_p187g35 0.27 +0.2
28,187 + HP15_p187g35 0.29 +0.1
28,187 + HP15_p187g35 0.29 +0.1
28,187 + HP15_p187g35 0.29 +0.9
28,187 + HP15_p187g35 0.29 +0.1
28,195 - HP15_p187g35 0.30 +0.1
28,195 - HP15_p187g35 0.30 -0.1
28,195 - HP15_p187g35 0.30 -1.7
28,213 + HP15_p187g35 0.32 -0.3
28,245 - HP15_p187g35 0.36 +0.2
28,280 + HP15_p187g35 0.41 -0.1
28,438 + HP15_p187g35 0.60 +1.1
28,442 + HP15_p187g35 0.60 +0.9
28,446 - HP15_p187g35 0.61 -0.8
28,446 - HP15_p187g35 0.61 +0.4
28,446 - HP15_p187g35 0.61 -1.2
28,450 - HP15_p187g35 0.61 -0.8
28,581 - HP15_p187g35 0.77 -0.1
28,623 + HP15_p187g35 0.82 -0.5
28,631 - HP15_p187g35 0.83 +0.3
28,645 + HP15_p187g35 0.85 +0.4
28,693 - -0.9
28,693 - -0.1
28,766 + -1.2
28,766 + +0.2
28,766 + +0.1
28,766 + +0.1
28,766 + -1.3
28,774 - +0.0
28,774 - -1.2
28,774 - -0.7
28,793 - -1.3
28,858 + +0.6
28,873 + -1.7
28,881 - -0.2
28,943 + HP15_p187g36 0.13 -0.3
28,943 + HP15_p187g36 0.13 +0.5
28,951 - HP15_p187g36 0.14 -0.4
29,014 - HP15_p187g36 0.26 +0.1
29,084 + HP15_p187g36 0.39 +0.3
29,092 - HP15_p187g36 0.41 +0.3
29,094 + HP15_p187g36 0.41 +0.1
29,107 + HP15_p187g36 0.44 +0.2
29,107 + HP15_p187g36 0.44 -1.1
29,108 + HP15_p187g36 0.44 -0.1
29,110 - HP15_p187g36 0.44 +0.7
29,145 + HP15_p187g36 0.51 +0.2
29,153 - HP15_p187g36 0.52 +0.4
29,153 - HP15_p187g36 0.52 +0.7
29,252 - HP15_p187g36 0.71 +0.4
29,271 + HP15_p187g36 0.74 +0.3
29,318 + HP15_p187g36 0.83 +0.2
29,318 + HP15_p187g36 0.83 -1.7
29,326 - HP15_p187g36 0.85 +0.1
29,326 - HP15_p187g36 0.85 +0.8
29,326 - HP15_p187g36 0.85 +0.1
29,388 + -2.2
29,448 + +0.2
29,448 + -0.1
29,456 - -1.2
29,461 + +0.7
29,469 - -0.2
29,487 + -1.5
29,512 - +0.5
29,662 - HP15_p187g37 0.10 +0.1
29,662 - HP15_p187g37 0.10 +0.2
29,741 + HP15_p187g37 0.14 -1.6

Or see this region's nucleotide sequence