Strain Fitness in Marinobacter adhaerens HP15 around HP15_4132

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4130 and HP15_4131 are separated by 12 nucleotidesHP15_4131 and HP15_4132 are separated by 32 nucleotidesHP15_4132 and HP15_4133 are separated by 43 nucleotidesHP15_4133 and HP15_4134 are separated by 39 nucleotides HP15_4130: HP15_4130 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 4,365,501 to 4,366,088 _4130 HP15_4131: HP15_4131 - formate dehydrogenase family accessory protein FdhD, at 4,366,101 to 4,366,970 _4131 HP15_4132: HP15_4132 - hypothetical protein, at 4,367,003 to 4,367,113 _4132 HP15_4133: HP15_4133 - sulfate/tungstate uptake family ABC transporter, periplasmic substrate-binding protein, at 4,367,157 to 4,367,993 _4133 HP15_4134: HP15_4134 - ABC-type polar amino acid transport system, ATPase component, at 4,368,033 to 4,368,776 _4134 Position (kb) 4367 4368Strain fitness (log2 ratio) -2 -1 0 1 2at 4366.106 kb on - strandat 4366.152 kb on - strandat 4366.169 kb on - strandat 4366.190 kb on - strand, within HP15_4131at 4366.232 kb on + strand, within HP15_4131at 4366.305 kb on + strand, within HP15_4131at 4366.306 kb on + strand, within HP15_4131at 4366.346 kb on + strand, within HP15_4131at 4366.346 kb on + strand, within HP15_4131at 4366.354 kb on + strand, within HP15_4131at 4366.359 kb on - strand, within HP15_4131at 4366.395 kb on + strand, within HP15_4131at 4366.465 kb on + strand, within HP15_4131at 4366.465 kb on + strand, within HP15_4131at 4366.482 kb on + strand, within HP15_4131at 4366.483 kb on - strand, within HP15_4131at 4366.552 kb on + strand, within HP15_4131at 4366.565 kb on - strand, within HP15_4131at 4366.575 kb on - strand, within HP15_4131at 4366.690 kb on - strand, within HP15_4131at 4366.820 kb on - strand, within HP15_4131at 4367.027 kb on + strand, within HP15_4132at 4367.037 kb on - strand, within HP15_4132at 4367.124 kb on + strandat 4367.132 kb on - strandat 4367.133 kb on + strandat 4367.133 kb on + strandat 4367.133 kb on + strandat 4367.141 kb on - strandat 4367.188 kb on - strandat 4367.348 kb on + strand, within HP15_4133at 4367.356 kb on - strand, within HP15_4133at 4367.425 kb on + strand, within HP15_4133at 4367.446 kb on - strand, within HP15_4133at 4367.454 kb on - strand, within HP15_4133at 4367.464 kb on - strand, within HP15_4133at 4367.520 kb on + strand, within HP15_4133at 4367.603 kb on - strand, within HP15_4133at 4367.613 kb on - strand, within HP15_4133at 4367.624 kb on - strand, within HP15_4133at 4367.774 kb on - strand, within HP15_4133at 4367.841 kb on + strand, within HP15_4133at 4367.858 kb on + strand, within HP15_4133at 4367.872 kb on - strand, within HP15_4133at 4368.025 kb on - strandat 4368.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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4,366,106 - +0.2
4,366,152 - +0.4
4,366,169 - -0.8
4,366,190 - HP15_4131 0.10 +0.4
4,366,232 + HP15_4131 0.15 +0.3
4,366,305 + HP15_4131 0.23 +0.6
4,366,306 + HP15_4131 0.24 -0.6
4,366,346 + HP15_4131 0.28 -1.9
4,366,346 + HP15_4131 0.28 -1.3
4,366,354 + HP15_4131 0.29 +0.1
4,366,359 - HP15_4131 0.30 -0.2
4,366,395 + HP15_4131 0.34 -0.8
4,366,465 + HP15_4131 0.42 +0.1
4,366,465 + HP15_4131 0.42 +2.0
4,366,482 + HP15_4131 0.44 +1.1
4,366,483 - HP15_4131 0.44 +1.0
4,366,552 + HP15_4131 0.52 +0.9
4,366,565 - HP15_4131 0.53 +0.3
4,366,575 - HP15_4131 0.54 +0.3
4,366,690 - HP15_4131 0.68 -0.6
4,366,820 - HP15_4131 0.83 -1.4
4,367,027 + HP15_4132 0.22 +0.5
4,367,037 - HP15_4132 0.31 +0.2
4,367,124 + -1.6
4,367,132 - +0.0
4,367,133 + +0.1
4,367,133 + -0.2
4,367,133 + -0.0
4,367,141 - +0.2
4,367,188 - +0.7
4,367,348 + HP15_4133 0.23 +0.7
4,367,356 - HP15_4133 0.24 -0.2
4,367,425 + HP15_4133 0.32 +0.1
4,367,446 - HP15_4133 0.35 -0.9
4,367,454 - HP15_4133 0.35 +2.1
4,367,464 - HP15_4133 0.37 -1.5
4,367,520 + HP15_4133 0.43 +0.7
4,367,603 - HP15_4133 0.53 +0.3
4,367,613 - HP15_4133 0.54 -0.1
4,367,624 - HP15_4133 0.56 +0.3
4,367,774 - HP15_4133 0.74 +0.4
4,367,841 + HP15_4133 0.82 -0.1
4,367,858 + HP15_4133 0.84 +0.9
4,367,872 - HP15_4133 0.85 -1.9
4,368,025 - -1.1
4,368,025 - +0.4

Or see this region's nucleotide sequence