Strain Fitness in Marinobacter adhaerens HP15 around HP15_4101

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4100 and HP15_4101 are separated by 11 nucleotidesHP15_4101 and HP15_4102 are separated by 94 nucleotides HP15_4100: HP15_4100 - long-chain-fatty-acid-CoA ligase, at 4,334,273 to 4,336,084 _4100 HP15_4101: HP15_4101 - membrane protein, at 4,336,096 to 4,336,416 _4101 HP15_4102: HP15_4102 - conserved hypothetical protein, at 4,336,511 to 4,337,497 _4102 Position (kb) 4336 4337Strain fitness (log2 ratio) -2 -1 0 1at 4335.100 kb on - strand, within HP15_4100at 4335.123 kb on - strand, within HP15_4100at 4335.244 kb on + strand, within HP15_4100at 4335.343 kb on + strand, within HP15_4100at 4335.351 kb on - strand, within HP15_4100at 4335.351 kb on - strand, within HP15_4100at 4335.404 kb on - strand, within HP15_4100at 4335.421 kb on - strand, within HP15_4100at 4335.452 kb on - strand, within HP15_4100at 4335.480 kb on - strand, within HP15_4100at 4335.494 kb on - strand, within HP15_4100at 4335.687 kb on - strand, within HP15_4100at 4335.687 kb on - strand, within HP15_4100at 4335.738 kb on + strand, within HP15_4100at 4335.810 kb on - strand, within HP15_4100at 4335.834 kb on - strand, within HP15_4100at 4335.839 kb on + strand, within HP15_4100at 4335.922 kb on - strandat 4335.983 kb on + strandat 4336.013 kb on - strandat 4336.159 kb on - strand, within HP15_4101at 4336.159 kb on - strand, within HP15_4101at 4336.159 kb on - strand, within HP15_4101at 4336.159 kb on - strand, within HP15_4101at 4336.159 kb on - strand, within HP15_4101at 4336.159 kb on - strand, within HP15_4101at 4336.311 kb on - strand, within HP15_4101at 4336.361 kb on + strand, within HP15_4101at 4336.445 kb on - strandat 4336.494 kb on + strandat 4336.523 kb on + strandat 4336.523 kb on + strandat 4336.531 kb on - strandat 4336.619 kb on + strand, within HP15_4102at 4336.655 kb on - strand, within HP15_4102at 4336.675 kb on - strand, within HP15_4102at 4336.781 kb on - strand, within HP15_4102at 4336.870 kb on - strand, within HP15_4102at 4336.886 kb on + strand, within HP15_4102at 4337.023 kb on - strand, within HP15_4102at 4337.055 kb on - strand, within HP15_4102at 4337.071 kb on - strand, within HP15_4102at 4337.110 kb on - strand, within HP15_4102at 4337.113 kb on + strand, within HP15_4102at 4337.138 kb on + strand, within HP15_4102at 4337.222 kb on - strand, within HP15_4102at 4337.310 kb on - strand, within HP15_4102at 4337.315 kb on - strand, within HP15_4102at 4337.315 kb on - strand, within HP15_4102at 4337.391 kb on + strand, within HP15_4102at 4337.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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4,335,100 - HP15_4100 0.46 -0.2
4,335,123 - HP15_4100 0.47 +1.0
4,335,244 + HP15_4100 0.54 -0.3
4,335,343 + HP15_4100 0.59 +0.2
4,335,351 - HP15_4100 0.59 -2.0
4,335,351 - HP15_4100 0.59 -0.4
4,335,404 - HP15_4100 0.62 +0.2
4,335,421 - HP15_4100 0.63 -0.2
4,335,452 - HP15_4100 0.65 +0.4
4,335,480 - HP15_4100 0.67 +0.1
4,335,494 - HP15_4100 0.67 +0.1
4,335,687 - HP15_4100 0.78 -0.6
4,335,687 - HP15_4100 0.78 -1.2
4,335,738 + HP15_4100 0.81 -0.3
4,335,810 - HP15_4100 0.85 -0.4
4,335,834 - HP15_4100 0.86 +0.3
4,335,839 + HP15_4100 0.86 +0.0
4,335,922 - -0.1
4,335,983 + +0.2
4,336,013 - +0.3
4,336,159 - HP15_4101 0.20 +0.9
4,336,159 - HP15_4101 0.20 +0.4
4,336,159 - HP15_4101 0.20 +0.7
4,336,159 - HP15_4101 0.20 -1.1
4,336,159 - HP15_4101 0.20 +0.2
4,336,159 - HP15_4101 0.20 +0.6
4,336,311 - HP15_4101 0.67 +0.3
4,336,361 + HP15_4101 0.83 +0.6
4,336,445 - +0.8
4,336,494 + -0.2
4,336,523 + +0.4
4,336,523 + -0.2
4,336,531 - +0.3
4,336,619 + HP15_4102 0.11 -0.6
4,336,655 - HP15_4102 0.15 +0.2
4,336,675 - HP15_4102 0.17 +0.2
4,336,781 - HP15_4102 0.27 +0.4
4,336,870 - HP15_4102 0.36 -0.0
4,336,886 + HP15_4102 0.38 +1.4
4,337,023 - HP15_4102 0.52 -0.0
4,337,055 - HP15_4102 0.55 +0.4
4,337,071 - HP15_4102 0.57 +0.4
4,337,110 - HP15_4102 0.61 +0.0
4,337,113 + HP15_4102 0.61 -0.6
4,337,138 + HP15_4102 0.64 +0.4
4,337,222 - HP15_4102 0.72 -1.9
4,337,310 - HP15_4102 0.81 -1.1
4,337,315 - HP15_4102 0.81 +0.0
4,337,315 - HP15_4102 0.81 -1.4
4,337,391 + HP15_4102 0.89 +0.5
4,337,406 - -1.8

Or see this region's nucleotide sequence