Strain Fitness in Marinobacter adhaerens HP15 around HP15_3992

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3989 and HP15_3990 overlap by 4 nucleotidesHP15_3990 and HP15_3991 overlap by 4 nucleotidesHP15_3991 and HP15_3992 overlap by 8 nucleotidesHP15_3992 and HP15_3993 overlap by 1 nucleotidesHP15_3993 and HP15_3994 overlap by 4 nucleotidesHP15_3994 and HP15_3995 are separated by 3 nucleotides HP15_3989: HP15_3989 - F0F1 ATP synthase subunit beta, at 4,222,027 to 4,223,418 _3989 HP15_3990: HP15_3990 - F0F1 ATP synthase subunit epsilon, at 4,223,415 to 4,223,825 _3990 HP15_3991: HP15_3991 - F0F1-ATPase subunit, at 4,223,822 to 4,224,127 _3991 HP15_3992: HP15_3992 - F0F1 ATP synthase subunit A-like protein, at 4,224,120 to 4,224,410 _3992 HP15_3993: HP15_3993 - F0F1 ATP synthase subunit A, at 4,224,410 to 4,225,099 _3993 HP15_3994: HP15_3994 - alternate ATPase, F0 complex, subunit C, at 4,225,096 to 4,225,383 _3994 HP15_3995: HP15_3995 - H(+)-transporting ATP synthase, subunit B, at 4,225,387 to 4,226,154 _3995 Position (kb) 4224 4225Strain fitness (log2 ratio) -2 -1 0 1 2at 4223.169 kb on + strand, within HP15_3989at 4223.218 kb on + strand, within HP15_3989at 4223.238 kb on + strand, within HP15_3989at 4223.367 kb on + strandat 4223.367 kb on + strandat 4223.387 kb on - strandat 4223.431 kb on - strandat 4223.562 kb on - strand, within HP15_3990at 4223.601 kb on - strand, within HP15_3990at 4223.604 kb on + strand, within HP15_3990at 4223.606 kb on - strand, within HP15_3990at 4223.647 kb on + strand, within HP15_3990at 4223.685 kb on + strand, within HP15_3990at 4223.695 kb on + strand, within HP15_3990at 4223.699 kb on + strand, within HP15_3990at 4223.760 kb on + strand, within HP15_3990at 4223.763 kb on - strand, within HP15_3990at 4223.765 kb on + strand, within HP15_3990at 4223.773 kb on - strand, within HP15_3990at 4223.810 kb on - strandat 4223.904 kb on - strand, within HP15_3991at 4223.919 kb on + strand, within HP15_3991at 4224.018 kb on + strand, within HP15_3991at 4224.056 kb on - strand, within HP15_3991at 4224.114 kb on + strandat 4224.253 kb on + strand, within HP15_3992at 4224.255 kb on + strand, within HP15_3992at 4224.261 kb on - strand, within HP15_3992at 4224.491 kb on + strand, within HP15_3993at 4224.567 kb on + strand, within HP15_3993at 4224.573 kb on + strand, within HP15_3993at 4224.641 kb on + strand, within HP15_3993at 4224.641 kb on + strand, within HP15_3993at 4224.641 kb on - strand, within HP15_3993at 4224.708 kb on + strand, within HP15_3993at 4224.741 kb on + strand, within HP15_3993at 4224.820 kb on + strand, within HP15_3993at 4224.825 kb on + strand, within HP15_3993at 4224.825 kb on + strand, within HP15_3993at 4224.833 kb on - strand, within HP15_3993at 4224.888 kb on - strand, within HP15_3993at 4224.890 kb on - strand, within HP15_3993at 4224.890 kb on - strand, within HP15_3993at 4224.921 kb on - strand, within HP15_3993at 4225.043 kb on + strandat 4225.043 kb on + strandat 4225.043 kb on + strandat 4225.131 kb on - strand, within HP15_3994at 4225.137 kb on - strand, within HP15_3994at 4225.162 kb on + strand, within HP15_3994at 4225.238 kb on + strand, within HP15_3994at 4225.239 kb on - strand, within HP15_3994at 4225.260 kb on + strand, within HP15_3994at 4225.371 kb on - strandat 4225.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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4,223,169 + HP15_3989 0.82 +0.1
4,223,218 + HP15_3989 0.86 -1.2
4,223,238 + HP15_3989 0.87 -2.0
4,223,367 + +0.0
4,223,367 + +0.2
4,223,387 - -0.1
4,223,431 - +0.9
4,223,562 - HP15_3990 0.36 +0.5
4,223,601 - HP15_3990 0.45 -0.0
4,223,604 + HP15_3990 0.46 +0.7
4,223,606 - HP15_3990 0.46 -0.3
4,223,647 + HP15_3990 0.56 +0.2
4,223,685 + HP15_3990 0.66 -0.5
4,223,695 + HP15_3990 0.68 -0.3
4,223,699 + HP15_3990 0.69 -1.6
4,223,760 + HP15_3990 0.84 -2.1
4,223,763 - HP15_3990 0.85 +0.5
4,223,765 + HP15_3990 0.85 +0.5
4,223,773 - HP15_3990 0.87 +0.0
4,223,810 - -2.0
4,223,904 - HP15_3991 0.27 -2.1
4,223,919 + HP15_3991 0.32 +0.6
4,224,018 + HP15_3991 0.64 -0.4
4,224,056 - HP15_3991 0.76 -1.2
4,224,114 + -1.1
4,224,253 + HP15_3992 0.46 -0.3
4,224,255 + HP15_3992 0.46 -1.9
4,224,261 - HP15_3992 0.48 +0.1
4,224,491 + HP15_3993 0.12 -0.2
4,224,567 + HP15_3993 0.23 -1.8
4,224,573 + HP15_3993 0.24 +0.6
4,224,641 + HP15_3993 0.33 +0.5
4,224,641 + HP15_3993 0.33 -0.1
4,224,641 - HP15_3993 0.33 +0.6
4,224,708 + HP15_3993 0.43 -0.1
4,224,741 + HP15_3993 0.48 -0.2
4,224,820 + HP15_3993 0.59 -1.8
4,224,825 + HP15_3993 0.60 -1.0
4,224,825 + HP15_3993 0.60 -0.5
4,224,833 - HP15_3993 0.61 -0.1
4,224,888 - HP15_3993 0.69 +0.0
4,224,890 - HP15_3993 0.70 +0.6
4,224,890 - HP15_3993 0.70 +0.0
4,224,921 - HP15_3993 0.74 -0.5
4,225,043 + +0.2
4,225,043 + +0.2
4,225,043 + -0.7
4,225,131 - HP15_3994 0.12 -0.1
4,225,137 - HP15_3994 0.14 +0.9
4,225,162 + HP15_3994 0.23 +0.7
4,225,238 + HP15_3994 0.49 +2.6
4,225,239 - HP15_3994 0.50 +0.3
4,225,260 + HP15_3994 0.57 -0.7
4,225,371 - -0.5
4,225,386 - -0.1

Or see this region's nucleotide sequence