Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3921 and HP15_3922 are separated by 434 nucleotides HP15_3922 and HP15_3923 are separated by 57 nucleotides
HP15_3921: HP15_3921 - extracellular solute-binding protein, family 7, bacteria, at 4,149,876 to 4,150,922
_3921
HP15_3922: HP15_3922 - protein containing phenylacetic acid degradation-related protein domain, at 4,151,357 to 4,151,797
_3922
HP15_3923: HP15_3923 - acyl-CoA dehydrogenase family protein, at 4,151,855 to 4,153,057
_3923
Position (kb)
4151
4152 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4150.444 kb on + strand, within HP15_3921 at 4150.566 kb on - strand, within HP15_3921 at 4150.569 kb on + strand, within HP15_3921 at 4150.602 kb on - strand, within HP15_3921 at 4150.602 kb on - strand, within HP15_3921 at 4150.607 kb on - strand, within HP15_3921 at 4150.680 kb on - strand, within HP15_3921 at 4150.680 kb on - strand, within HP15_3921 at 4150.680 kb on - strand, within HP15_3921 at 4150.751 kb on + strand, within HP15_3921 at 4150.759 kb on - strand, within HP15_3921 at 4150.765 kb on + strand, within HP15_3921 at 4150.833 kb on + strand at 4150.878 kb on + strand at 4150.886 kb on - strand at 4150.906 kb on + strand at 4151.106 kb on + strand at 4151.117 kb on - strand at 4151.149 kb on - strand at 4151.340 kb on + strand at 4151.463 kb on + strand, within HP15_3922 at 4151.463 kb on + strand, within HP15_3922 at 4151.482 kb on - strand, within HP15_3922 at 4151.516 kb on + strand, within HP15_3922 at 4151.524 kb on - strand, within HP15_3922 at 4151.526 kb on - strand, within HP15_3922 at 4151.686 kb on + strand, within HP15_3922 at 4151.692 kb on - strand, within HP15_3922 at 4151.694 kb on + strand, within HP15_3922 at 4151.708 kb on + strand, within HP15_3922 at 4151.786 kb on + strand at 4151.874 kb on + strand at 4151.874 kb on - strand at 4151.915 kb on + strand at 4151.961 kb on - strand at 4152.013 kb on + strand, within HP15_3923 at 4152.031 kb on + strand, within HP15_3923 at 4152.040 kb on + strand, within HP15_3923 at 4152.063 kb on + strand, within HP15_3923 at 4152.097 kb on - strand, within HP15_3923 at 4152.165 kb on + strand, within HP15_3923 at 4152.287 kb on - strand, within HP15_3923 at 4152.471 kb on + strand, within HP15_3923 at 4152.551 kb on - strand, within HP15_3923 at 4152.564 kb on - strand, within HP15_3923 at 4152.600 kb on + strand, within HP15_3923 at 4152.605 kb on + strand, within HP15_3923 at 4152.657 kb on + strand, within HP15_3923 at 4152.670 kb on - strand, within HP15_3923 at 4152.712 kb on - strand, within HP15_3923 at 4152.765 kb on + strand, within HP15_3923 at 4152.787 kb on - strand, within HP15_3923 at 4152.791 kb on - strand, within HP15_3923
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 4,150,444 + HP15_3921 0.54 -1.0 4,150,566 - HP15_3921 0.66 +0.1 4,150,569 + HP15_3921 0.66 +0.2 4,150,602 - HP15_3921 0.69 +0.3 4,150,602 - HP15_3921 0.69 +0.7 4,150,607 - HP15_3921 0.70 -0.2 4,150,680 - HP15_3921 0.77 +0.5 4,150,680 - HP15_3921 0.77 +0.4 4,150,680 - HP15_3921 0.77 -0.7 4,150,751 + HP15_3921 0.84 +0.4 4,150,759 - HP15_3921 0.84 +0.0 4,150,765 + HP15_3921 0.85 +0.7 4,150,833 + +0.5 4,150,878 + +0.0 4,150,886 - -1.3 4,150,906 + +0.1 4,151,106 + +0.4 4,151,117 - +0.3 4,151,149 - -0.6 4,151,340 + +0.1 4,151,463 + HP15_3922 0.24 +0.4 4,151,463 + HP15_3922 0.24 +0.2 4,151,482 - HP15_3922 0.28 -1.3 4,151,516 + HP15_3922 0.36 -0.1 4,151,524 - HP15_3922 0.38 -1.7 4,151,526 - HP15_3922 0.38 +0.4 4,151,686 + HP15_3922 0.75 -1.4 4,151,692 - HP15_3922 0.76 -2.4 4,151,694 + HP15_3922 0.76 +0.2 4,151,708 + HP15_3922 0.80 -1.6 4,151,786 + -0.1 4,151,874 + -0.2 4,151,874 - +0.9 4,151,915 + -1.3 4,151,961 - +0.7 4,152,013 + HP15_3923 0.13 +0.1 4,152,031 + HP15_3923 0.15 +0.1 4,152,040 + HP15_3923 0.15 -0.9 4,152,063 + HP15_3923 0.17 +0.1 4,152,097 - HP15_3923 0.20 +0.4 4,152,165 + HP15_3923 0.26 -0.8 4,152,287 - HP15_3923 0.36 +0.2 4,152,471 + HP15_3923 0.51 +0.6 4,152,551 - HP15_3923 0.58 +0.6 4,152,564 - HP15_3923 0.59 -1.8 4,152,600 + HP15_3923 0.62 -1.7 4,152,605 + HP15_3923 0.62 -1.8 4,152,657 + HP15_3923 0.67 +0.1 4,152,670 - HP15_3923 0.68 +0.6 4,152,712 - HP15_3923 0.71 +0.4 4,152,765 + HP15_3923 0.76 -0.1 4,152,787 - HP15_3923 0.77 -1.2 4,152,791 - HP15_3923 0.78 -2.9
Or see this region's nucleotide sequence