Strain Fitness in Marinobacter adhaerens HP15 around HP15_3922

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3921 and HP15_3922 are separated by 434 nucleotidesHP15_3922 and HP15_3923 are separated by 57 nucleotides HP15_3921: HP15_3921 - extracellular solute-binding protein, family 7, bacteria, at 4,149,876 to 4,150,922 _3921 HP15_3922: HP15_3922 - protein containing phenylacetic acid degradation-related protein domain, at 4,151,357 to 4,151,797 _3922 HP15_3923: HP15_3923 - acyl-CoA dehydrogenase family protein, at 4,151,855 to 4,153,057 _3923 Position (kb) 4151 4152Strain fitness (log2 ratio) -3 -2 -1 0 1at 4150.444 kb on + strand, within HP15_3921at 4150.566 kb on - strand, within HP15_3921at 4150.569 kb on + strand, within HP15_3921at 4150.602 kb on - strand, within HP15_3921at 4150.602 kb on - strand, within HP15_3921at 4150.607 kb on - strand, within HP15_3921at 4150.680 kb on - strand, within HP15_3921at 4150.680 kb on - strand, within HP15_3921at 4150.680 kb on - strand, within HP15_3921at 4150.751 kb on + strand, within HP15_3921at 4150.759 kb on - strand, within HP15_3921at 4150.765 kb on + strand, within HP15_3921at 4150.833 kb on + strandat 4150.878 kb on + strandat 4150.886 kb on - strandat 4150.906 kb on + strandat 4151.106 kb on + strandat 4151.117 kb on - strandat 4151.149 kb on - strandat 4151.340 kb on + strandat 4151.463 kb on + strand, within HP15_3922at 4151.463 kb on + strand, within HP15_3922at 4151.482 kb on - strand, within HP15_3922at 4151.516 kb on + strand, within HP15_3922at 4151.524 kb on - strand, within HP15_3922at 4151.526 kb on - strand, within HP15_3922at 4151.686 kb on + strand, within HP15_3922at 4151.692 kb on - strand, within HP15_3922at 4151.694 kb on + strand, within HP15_3922at 4151.708 kb on + strand, within HP15_3922at 4151.786 kb on + strandat 4151.874 kb on + strandat 4151.874 kb on - strandat 4151.915 kb on + strandat 4151.961 kb on - strandat 4152.013 kb on + strand, within HP15_3923at 4152.031 kb on + strand, within HP15_3923at 4152.040 kb on + strand, within HP15_3923at 4152.063 kb on + strand, within HP15_3923at 4152.097 kb on - strand, within HP15_3923at 4152.165 kb on + strand, within HP15_3923at 4152.287 kb on - strand, within HP15_3923at 4152.471 kb on + strand, within HP15_3923at 4152.551 kb on - strand, within HP15_3923at 4152.564 kb on - strand, within HP15_3923at 4152.600 kb on + strand, within HP15_3923at 4152.605 kb on + strand, within HP15_3923at 4152.657 kb on + strand, within HP15_3923at 4152.670 kb on - strand, within HP15_3923at 4152.712 kb on - strand, within HP15_3923at 4152.765 kb on + strand, within HP15_3923at 4152.787 kb on - strand, within HP15_3923at 4152.791 kb on - strand, within HP15_3923

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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4,150,444 + HP15_3921 0.54 -1.0
4,150,566 - HP15_3921 0.66 +0.1
4,150,569 + HP15_3921 0.66 +0.2
4,150,602 - HP15_3921 0.69 +0.3
4,150,602 - HP15_3921 0.69 +0.7
4,150,607 - HP15_3921 0.70 -0.2
4,150,680 - HP15_3921 0.77 +0.5
4,150,680 - HP15_3921 0.77 +0.4
4,150,680 - HP15_3921 0.77 -0.7
4,150,751 + HP15_3921 0.84 +0.4
4,150,759 - HP15_3921 0.84 +0.0
4,150,765 + HP15_3921 0.85 +0.7
4,150,833 + +0.5
4,150,878 + +0.0
4,150,886 - -1.3
4,150,906 + +0.1
4,151,106 + +0.4
4,151,117 - +0.3
4,151,149 - -0.6
4,151,340 + +0.1
4,151,463 + HP15_3922 0.24 +0.4
4,151,463 + HP15_3922 0.24 +0.2
4,151,482 - HP15_3922 0.28 -1.3
4,151,516 + HP15_3922 0.36 -0.1
4,151,524 - HP15_3922 0.38 -1.7
4,151,526 - HP15_3922 0.38 +0.4
4,151,686 + HP15_3922 0.75 -1.4
4,151,692 - HP15_3922 0.76 -2.4
4,151,694 + HP15_3922 0.76 +0.2
4,151,708 + HP15_3922 0.80 -1.6
4,151,786 + -0.1
4,151,874 + -0.2
4,151,874 - +0.9
4,151,915 + -1.3
4,151,961 - +0.7
4,152,013 + HP15_3923 0.13 +0.1
4,152,031 + HP15_3923 0.15 +0.1
4,152,040 + HP15_3923 0.15 -0.9
4,152,063 + HP15_3923 0.17 +0.1
4,152,097 - HP15_3923 0.20 +0.4
4,152,165 + HP15_3923 0.26 -0.8
4,152,287 - HP15_3923 0.36 +0.2
4,152,471 + HP15_3923 0.51 +0.6
4,152,551 - HP15_3923 0.58 +0.6
4,152,564 - HP15_3923 0.59 -1.8
4,152,600 + HP15_3923 0.62 -1.7
4,152,605 + HP15_3923 0.62 -1.8
4,152,657 + HP15_3923 0.67 +0.1
4,152,670 - HP15_3923 0.68 +0.6
4,152,712 - HP15_3923 0.71 +0.4
4,152,765 + HP15_3923 0.76 -0.1
4,152,787 - HP15_3923 0.77 -1.2
4,152,791 - HP15_3923 0.78 -2.9

Or see this region's nucleotide sequence