Strain Fitness in Marinobacter adhaerens HP15 around HP15_3831

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3830 and HP15_3831 are separated by 246 nucleotidesHP15_3831 and HP15_3832 are separated by 87 nucleotidesHP15_3832 and HP15_3833 are separated by 25 nucleotides HP15_3830: HP15_3830 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 4,056,823 to 4,058,133 _3830 HP15_3831: HP15_3831 - transcriptional regulator, TetR family protein, at 4,058,380 to 4,058,985 _3831 HP15_3832: HP15_3832 - hypothetical protein, at 4,059,073 to 4,059,657 _3832 HP15_3833: HP15_3833 - nitrous-oxide reductase transcriptional activator NosR, at 4,059,683 to 4,061,749 _3833 Position (kb) 4058 4059Strain fitness (log2 ratio) -3 -2 -1 0 1at 4057.516 kb on - strand, within HP15_3830at 4057.524 kb on + strand, within HP15_3830at 4057.578 kb on + strand, within HP15_3830at 4057.634 kb on - strand, within HP15_3830at 4057.701 kb on + strand, within HP15_3830at 4057.709 kb on - strand, within HP15_3830at 4057.709 kb on - strand, within HP15_3830at 4057.771 kb on - strand, within HP15_3830at 4057.811 kb on + strand, within HP15_3830at 4057.818 kb on + strand, within HP15_3830at 4057.831 kb on - strand, within HP15_3830at 4058.079 kb on - strandat 4058.123 kb on + strandat 4058.137 kb on + strandat 4058.145 kb on - strandat 4058.145 kb on - strandat 4058.245 kb on + strandat 4058.245 kb on + strandat 4058.335 kb on + strandat 4058.343 kb on - strandat 4058.480 kb on + strand, within HP15_3831at 4058.528 kb on + strand, within HP15_3831at 4058.569 kb on + strand, within HP15_3831at 4058.611 kb on - strand, within HP15_3831at 4058.736 kb on - strand, within HP15_3831at 4058.759 kb on + strand, within HP15_3831at 4058.788 kb on + strand, within HP15_3831at 4058.793 kb on + strand, within HP15_3831at 4058.892 kb on + strand, within HP15_3831at 4059.155 kb on - strand, within HP15_3832at 4059.270 kb on - strand, within HP15_3832at 4059.275 kb on + strand, within HP15_3832at 4059.658 kb on + strandat 4059.886 kb on + strandat 4059.887 kb on - strandat 4059.894 kb on - strand, within HP15_3833at 4059.894 kb on - strand, within HP15_3833

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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4,057,516 - HP15_3830 0.53 +0.3
4,057,524 + HP15_3830 0.53 -0.6
4,057,578 + HP15_3830 0.58 -2.0
4,057,634 - HP15_3830 0.62 +0.1
4,057,701 + HP15_3830 0.67 -0.8
4,057,709 - HP15_3830 0.68 +0.1
4,057,709 - HP15_3830 0.68 -0.1
4,057,771 - HP15_3830 0.72 -0.6
4,057,811 + HP15_3830 0.75 +1.0
4,057,818 + HP15_3830 0.76 +0.8
4,057,831 - HP15_3830 0.77 -0.1
4,058,079 - -0.1
4,058,123 + -0.2
4,058,137 + -1.7
4,058,145 - +1.2
4,058,145 - +0.6
4,058,245 + -2.1
4,058,245 + -1.6
4,058,335 + +0.0
4,058,343 - -0.2
4,058,480 + HP15_3831 0.17 -0.8
4,058,528 + HP15_3831 0.24 -1.0
4,058,569 + HP15_3831 0.31 -2.5
4,058,611 - HP15_3831 0.38 -1.0
4,058,736 - HP15_3831 0.59 -3.6
4,058,759 + HP15_3831 0.63 -2.8
4,058,788 + HP15_3831 0.67 -2.9
4,058,793 + HP15_3831 0.68 -1.9
4,058,892 + HP15_3831 0.84 -2.2
4,059,155 - HP15_3832 0.14 +0.6
4,059,270 - HP15_3832 0.34 +0.5
4,059,275 + HP15_3832 0.35 +0.0
4,059,658 + +1.3
4,059,886 + +0.0
4,059,887 - -2.0
4,059,894 - HP15_3833 0.10 +0.6
4,059,894 - HP15_3833 0.10 +0.3

Or see this region's nucleotide sequence