Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3694 and HP15_3695 are separated by 38 nucleotides HP15_3695 and HP15_3696 overlap by 2 nucleotides
HP15_3694: HP15_3694 - efflux transporter, RND family, MFP subunit, at 3,896,476 to 3,897,570
_3694
HP15_3695: HP15_3695 - lipoprotein, at 3,897,609 to 3,898,169
_3695
HP15_3696: HP15_3696 - acyl-CoA dehydrogenase domain protein, at 3,898,168 to 3,900,237
_3696
Position (kb)
3897
3898
3899 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3896.637 kb on + strand, within HP15_3694 at 3896.637 kb on + strand, within HP15_3694 at 3896.715 kb on - strand, within HP15_3694 at 3896.786 kb on - strand, within HP15_3694 at 3896.788 kb on + strand, within HP15_3694 at 3896.836 kb on + strand, within HP15_3694 at 3896.892 kb on - strand, within HP15_3694 at 3896.912 kb on + strand, within HP15_3694 at 3896.930 kb on + strand, within HP15_3694 at 3896.938 kb on - strand, within HP15_3694 at 3896.975 kb on + strand, within HP15_3694 at 3896.976 kb on - strand, within HP15_3694 at 3896.987 kb on + strand, within HP15_3694 at 3896.995 kb on - strand, within HP15_3694 at 3896.995 kb on - strand, within HP15_3694 at 3897.043 kb on - strand, within HP15_3694 at 3897.100 kb on + strand, within HP15_3694 at 3897.118 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.246 kb on + strand, within HP15_3694 at 3897.257 kb on + strand, within HP15_3694 at 3897.257 kb on + strand, within HP15_3694 at 3897.265 kb on - strand, within HP15_3694 at 3897.363 kb on + strand, within HP15_3694 at 3897.373 kb on + strand, within HP15_3694 at 3897.614 kb on - strand at 3897.677 kb on - strand, within HP15_3695 at 3897.733 kb on - strand, within HP15_3695 at 3897.830 kb on + strand, within HP15_3695 at 3897.867 kb on - strand, within HP15_3695 at 3897.887 kb on + strand, within HP15_3695 at 3897.913 kb on - strand, within HP15_3695 at 3898.026 kb on + strand, within HP15_3695 at 3898.040 kb on + strand, within HP15_3695 at 3898.048 kb on - strand, within HP15_3695 at 3898.110 kb on - strand, within HP15_3695 at 3898.180 kb on - strand at 3898.180 kb on - strand at 3898.181 kb on + strand at 3898.189 kb on - strand at 3898.340 kb on + strand at 3898.389 kb on - strand, within HP15_3696 at 3898.415 kb on - strand, within HP15_3696 at 3898.476 kb on - strand, within HP15_3696 at 3898.490 kb on + strand, within HP15_3696 at 3898.495 kb on + strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.573 kb on + strand, within HP15_3696 at 3898.593 kb on - strand, within HP15_3696 at 3898.720 kb on + strand, within HP15_3696 at 3898.794 kb on - strand, within HP15_3696 at 3898.796 kb on + strand, within HP15_3696 at 3898.804 kb on - strand, within HP15_3696 at 3898.804 kb on - strand, within HP15_3696 at 3898.841 kb on + strand, within HP15_3696 at 3898.865 kb on + strand, within HP15_3696 at 3898.933 kb on + strand, within HP15_3696 at 3898.952 kb on - strand, within HP15_3696 at 3898.958 kb on - strand, within HP15_3696 at 3898.963 kb on + strand, within HP15_3696 at 3899.061 kb on - strand, within HP15_3696 at 3899.061 kb on - strand, within HP15_3696 at 3899.061 kb on - strand, within HP15_3696 at 3899.084 kb on - strand, within HP15_3696 at 3899.149 kb on - strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.166 kb on - strand, within HP15_3696 at 3899.166 kb on - strand, within HP15_3696
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,896,637 + HP15_3694 0.15 +0.5 3,896,637 + HP15_3694 0.15 +0.3 3,896,715 - HP15_3694 0.22 +1.5 3,896,786 - HP15_3694 0.28 -1.8 3,896,788 + HP15_3694 0.28 -1.1 3,896,836 + HP15_3694 0.33 -2.4 3,896,892 - HP15_3694 0.38 -0.1 3,896,912 + HP15_3694 0.40 +0.7 3,896,930 + HP15_3694 0.41 +0.2 3,896,938 - HP15_3694 0.42 -1.3 3,896,975 + HP15_3694 0.46 -2.0 3,896,976 - HP15_3694 0.46 +0.7 3,896,987 + HP15_3694 0.47 -0.1 3,896,995 - HP15_3694 0.47 +0.0 3,896,995 - HP15_3694 0.47 +1.8 3,897,043 - HP15_3694 0.52 -2.2 3,897,100 + HP15_3694 0.57 +0.5 3,897,118 - HP15_3694 0.59 +1.3 3,897,176 - HP15_3694 0.64 -0.2 3,897,176 - HP15_3694 0.64 +0.9 3,897,176 - HP15_3694 0.64 -0.3 3,897,246 + HP15_3694 0.70 -2.1 3,897,257 + HP15_3694 0.71 -0.2 3,897,257 + HP15_3694 0.71 -0.1 3,897,265 - HP15_3694 0.72 -0.1 3,897,363 + HP15_3694 0.81 +0.3 3,897,373 + HP15_3694 0.82 +0.7 3,897,614 - +0.6 3,897,677 - HP15_3695 0.12 -1.3 3,897,733 - HP15_3695 0.22 +0.0 3,897,830 + HP15_3695 0.39 -1.8 3,897,867 - HP15_3695 0.46 +0.0 3,897,887 + HP15_3695 0.50 -1.5 3,897,913 - HP15_3695 0.54 +0.2 3,898,026 + HP15_3695 0.74 +0.4 3,898,040 + HP15_3695 0.77 +0.5 3,898,048 - HP15_3695 0.78 -1.0 3,898,110 - HP15_3695 0.89 +0.5 3,898,180 - +0.2 3,898,180 - -0.1 3,898,181 + -1.3 3,898,189 - +0.6 3,898,340 + -0.2 3,898,389 - HP15_3696 0.11 -1.0 3,898,415 - HP15_3696 0.12 +0.5 3,898,476 - HP15_3696 0.15 -0.1 3,898,490 + HP15_3696 0.16 +0.3 3,898,495 + HP15_3696 0.16 -0.4 3,898,503 - HP15_3696 0.16 -1.0 3,898,503 - HP15_3696 0.16 -0.5 3,898,503 - HP15_3696 0.16 -0.0 3,898,573 + HP15_3696 0.20 -1.6 3,898,593 - HP15_3696 0.21 -0.4 3,898,720 + HP15_3696 0.27 -0.8 3,898,794 - HP15_3696 0.30 +0.1 3,898,796 + HP15_3696 0.30 -1.6 3,898,804 - HP15_3696 0.31 +0.3 3,898,804 - HP15_3696 0.31 -2.7 3,898,841 + HP15_3696 0.33 +0.1 3,898,865 + HP15_3696 0.34 +0.1 3,898,933 + HP15_3696 0.37 +0.2 3,898,952 - HP15_3696 0.38 +0.5 3,898,958 - HP15_3696 0.38 -0.0 3,898,963 + HP15_3696 0.38 +0.4 3,899,061 - HP15_3696 0.43 +1.3 3,899,061 - HP15_3696 0.43 +0.1 3,899,061 - HP15_3696 0.43 +0.1 3,899,084 - HP15_3696 0.44 -0.2 3,899,149 - HP15_3696 0.47 +0.1 3,899,158 + HP15_3696 0.48 -0.3 3,899,158 + HP15_3696 0.48 +0.4 3,899,158 + HP15_3696 0.48 +0.8 3,899,158 + HP15_3696 0.48 -0.2 3,899,166 - HP15_3696 0.48 -0.7 3,899,166 - HP15_3696 0.48 -0.0
Or see this region's nucleotide sequence