Strain Fitness in Marinobacter adhaerens HP15 around HP15_3571

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3570 and HP15_3571 overlap by 8 nucleotidesHP15_3571 and HP15_3572 overlap by 7 nucleotides HP15_3570: HP15_3570 - membrane protein containing DUF6, transmembrane, at 3,761,862 to 3,762,830 _3570 HP15_3571: HP15_3571 - carbohydrate-binding family V/XII, at 3,762,823 to 3,763,368 _3571 HP15_3572: HP15_3572 - aminotransferase, classes I and II, at 3,763,362 to 3,764,567 _3572 Position (kb) 3762 3763 3764Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3761.849 kb on - strandat 3761.854 kb on - strandat 3761.854 kb on - strandat 3761.856 kb on + strandat 3761.906 kb on + strandat 3761.906 kb on + strandat 3762.003 kb on + strand, within HP15_3570at 3762.021 kb on - strand, within HP15_3570at 3762.131 kb on + strand, within HP15_3570at 3762.139 kb on - strand, within HP15_3570at 3762.178 kb on + strand, within HP15_3570at 3762.183 kb on + strand, within HP15_3570at 3762.191 kb on - strand, within HP15_3570at 3762.191 kb on - strand, within HP15_3570at 3762.335 kb on - strand, within HP15_3570at 3762.378 kb on + strand, within HP15_3570at 3762.378 kb on + strand, within HP15_3570at 3762.590 kb on - strand, within HP15_3570at 3762.627 kb on - strand, within HP15_3570at 3762.629 kb on + strand, within HP15_3570at 3762.661 kb on - strand, within HP15_3570at 3762.777 kb on + strandat 3762.934 kb on + strand, within HP15_3571at 3762.939 kb on + strand, within HP15_3571at 3762.954 kb on + strand, within HP15_3571at 3762.962 kb on - strand, within HP15_3571at 3763.145 kb on - strand, within HP15_3571at 3763.148 kb on + strand, within HP15_3571at 3763.158 kb on + strand, within HP15_3571at 3763.186 kb on + strand, within HP15_3571at 3763.261 kb on + strand, within HP15_3571at 3763.274 kb on - strand, within HP15_3571at 3763.289 kb on + strand, within HP15_3571at 3763.352 kb on - strandat 3763.352 kb on - strandat 3763.354 kb on + strandat 3763.391 kb on - strandat 3763.391 kb on - strandat 3763.472 kb on - strandat 3763.474 kb on + strandat 3763.542 kb on + strand, within HP15_3572at 3763.580 kb on - strand, within HP15_3572at 3763.733 kb on + strand, within HP15_3572at 3763.741 kb on - strand, within HP15_3572at 3763.808 kb on + strand, within HP15_3572at 3763.817 kb on + strand, within HP15_3572at 3763.836 kb on - strand, within HP15_3572at 3763.858 kb on + strand, within HP15_3572at 3763.866 kb on - strand, within HP15_3572at 3763.901 kb on - strand, within HP15_3572at 3763.983 kb on + strand, within HP15_3572at 3764.011 kb on + strand, within HP15_3572at 3764.036 kb on + strand, within HP15_3572at 3764.039 kb on - strand, within HP15_3572at 3764.046 kb on - strand, within HP15_3572at 3764.046 kb on - strand, within HP15_3572at 3764.058 kb on - strand, within HP15_3572at 3764.092 kb on - strand, within HP15_3572at 3764.107 kb on - strand, within HP15_3572at 3764.138 kb on - strand, within HP15_3572at 3764.178 kb on + strand, within HP15_3572at 3764.186 kb on - strand, within HP15_3572at 3764.279 kb on - strand, within HP15_3572at 3764.284 kb on - strand, within HP15_3572at 3764.357 kb on + strand, within HP15_3572at 3764.365 kb on - strand, within HP15_3572at 3764.365 kb on - strand, within HP15_3572

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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3,761,849 - -0.9
3,761,854 - -1.7
3,761,854 - -0.7
3,761,856 + -1.1
3,761,906 + +0.9
3,761,906 + -1.2
3,762,003 + HP15_3570 0.15 +0.1
3,762,021 - HP15_3570 0.16 -0.9
3,762,131 + HP15_3570 0.28 +0.7
3,762,139 - HP15_3570 0.29 -1.4
3,762,178 + HP15_3570 0.33 +0.6
3,762,183 + HP15_3570 0.33 +0.6
3,762,191 - HP15_3570 0.34 -0.5
3,762,191 - HP15_3570 0.34 -0.7
3,762,335 - HP15_3570 0.49 -0.6
3,762,378 + HP15_3570 0.53 +0.9
3,762,378 + HP15_3570 0.53 +1.4
3,762,590 - HP15_3570 0.75 -1.8
3,762,627 - HP15_3570 0.79 -1.5
3,762,629 + HP15_3570 0.79 +0.6
3,762,661 - HP15_3570 0.82 -0.5
3,762,777 + +0.0
3,762,934 + HP15_3571 0.20 -2.2
3,762,939 + HP15_3571 0.21 -2.4
3,762,954 + HP15_3571 0.24 -2.2
3,762,962 - HP15_3571 0.25 +1.1
3,763,145 - HP15_3571 0.59 -3.3
3,763,148 + HP15_3571 0.60 -0.7
3,763,158 + HP15_3571 0.61 -1.5
3,763,186 + HP15_3571 0.66 -2.3
3,763,261 + HP15_3571 0.80 -2.1
3,763,274 - HP15_3571 0.83 -2.1
3,763,289 + HP15_3571 0.85 -4.2
3,763,352 - -1.6
3,763,352 - -1.3
3,763,354 + -0.9
3,763,391 - -0.8
3,763,391 - -3.0
3,763,472 - -0.4
3,763,474 + -1.5
3,763,542 + HP15_3572 0.15 -0.7
3,763,580 - HP15_3572 0.18 -0.3
3,763,733 + HP15_3572 0.31 +0.7
3,763,741 - HP15_3572 0.31 -0.5
3,763,808 + HP15_3572 0.37 -0.2
3,763,817 + HP15_3572 0.38 +0.2
3,763,836 - HP15_3572 0.39 -0.3
3,763,858 + HP15_3572 0.41 +0.4
3,763,866 - HP15_3572 0.42 -3.1
3,763,901 - HP15_3572 0.45 -0.7
3,763,983 + HP15_3572 0.51 -0.1
3,764,011 + HP15_3572 0.54 +0.1
3,764,036 + HP15_3572 0.56 +0.4
3,764,039 - HP15_3572 0.56 +0.6
3,764,046 - HP15_3572 0.57 -0.2
3,764,046 - HP15_3572 0.57 +0.9
3,764,058 - HP15_3572 0.58 +0.2
3,764,092 - HP15_3572 0.61 +0.2
3,764,107 - HP15_3572 0.62 -0.7
3,764,138 - HP15_3572 0.64 -1.8
3,764,178 + HP15_3572 0.68 +0.4
3,764,186 - HP15_3572 0.68 -1.7
3,764,279 - HP15_3572 0.76 -0.4
3,764,284 - HP15_3572 0.76 -0.2
3,764,357 + HP15_3572 0.83 -0.1
3,764,365 - HP15_3572 0.83 +0.0
3,764,365 - HP15_3572 0.83 +0.1

Or see this region's nucleotide sequence