Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3546 and HP15_3547 overlap by 1 nucleotides HP15_3547 and HP15_3548 overlap by 23 nucleotides HP15_3548 and HP15_3549 are separated by 156 nucleotides HP15_3549 and HP15_3550 are separated by 46 nucleotides
HP15_3546: HP15_3546 - copper-translocating P-type ATPase, at 3,734,767 to 3,737,388
_3546
HP15_3547: HP15_3547 - hypothetical protein, at 3,737,388 to 3,737,504
_3547
HP15_3548: HP15_3548 - metal-binding protein, at 3,737,482 to 3,737,964
_3548
HP15_3549: HP15_3549 - diguanylate cyclase, at 3,738,121 to 3,739,842
_3549
HP15_3550: HP15_3550 - conserved hypothetical protein, at 3,739,889 to 3,740,920
_3550
Position (kb)
3738
3739
3740 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3737.209 kb on + strand at 3737.214 kb on + strand at 3737.214 kb on + strand at 3737.214 kb on + strand at 3737.214 kb on + strand at 3737.222 kb on - strand at 3737.222 kb on - strand at 3737.224 kb on + strand at 3737.233 kb on + strand at 3737.233 kb on + strand at 3737.266 kb on - strand at 3737.305 kb on + strand at 3737.313 kb on - strand at 3737.341 kb on - strand at 3737.390 kb on - strand at 3737.416 kb on + strand, within HP15_3547 at 3737.424 kb on - strand, within HP15_3547 at 3737.484 kb on - strand at 3737.590 kb on + strand, within HP15_3548 at 3737.590 kb on + strand, within HP15_3548 at 3737.598 kb on - strand, within HP15_3548 at 3737.603 kb on - strand, within HP15_3548 at 3737.605 kb on - strand, within HP15_3548 at 3737.614 kb on + strand, within HP15_3548 at 3737.622 kb on - strand, within HP15_3548 at 3737.706 kb on + strand, within HP15_3548 at 3737.708 kb on - strand, within HP15_3548 at 3737.747 kb on - strand, within HP15_3548 at 3737.763 kb on - strand, within HP15_3548 at 3737.814 kb on + strand, within HP15_3548 at 3737.847 kb on - strand, within HP15_3548 at 3737.848 kb on - strand, within HP15_3548 at 3737.907 kb on - strand, within HP15_3548 at 3737.977 kb on + strand at 3738.001 kb on + strand at 3738.023 kb on - strand at 3738.166 kb on - strand at 3738.197 kb on + strand at 3738.240 kb on - strand at 3738.251 kb on - strand at 3738.259 kb on + strand at 3738.269 kb on + strand at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.329 kb on + strand, within HP15_3549 at 3738.337 kb on - strand, within HP15_3549 at 3738.337 kb on - strand, within HP15_3549 at 3738.377 kb on + strand, within HP15_3549 at 3738.385 kb on - strand, within HP15_3549 at 3738.504 kb on + strand, within HP15_3549 at 3738.525 kb on + strand, within HP15_3549 at 3738.685 kb on - strand, within HP15_3549 at 3738.729 kb on + strand, within HP15_3549 at 3738.740 kb on - strand, within HP15_3549 at 3738.774 kb on + strand, within HP15_3549 at 3738.775 kb on - strand, within HP15_3549 at 3738.842 kb on - strand, within HP15_3549 at 3738.924 kb on - strand, within HP15_3549 at 3738.966 kb on - strand, within HP15_3549 at 3738.985 kb on - strand, within HP15_3549 at 3739.004 kb on + strand, within HP15_3549 at 3739.042 kb on + strand, within HP15_3549 at 3739.071 kb on - strand, within HP15_3549 at 3739.182 kb on + strand, within HP15_3549 at 3739.197 kb on + strand, within HP15_3549 at 3739.283 kb on - strand, within HP15_3549 at 3739.435 kb on - strand, within HP15_3549 at 3739.448 kb on + strand, within HP15_3549 at 3739.526 kb on + strand, within HP15_3549 at 3739.530 kb on - strand, within HP15_3549 at 3739.534 kb on - strand, within HP15_3549 at 3739.557 kb on + strand, within HP15_3549 at 3739.797 kb on - strand at 3739.802 kb on - strand at 3739.918 kb on - strand at 3739.918 kb on - strand at 3740.011 kb on + strand, within HP15_3550 at 3740.037 kb on + strand, within HP15_3550 at 3740.045 kb on - strand, within HP15_3550 at 3740.094 kb on + strand, within HP15_3550 at 3740.095 kb on + strand, within HP15_3550 at 3740.136 kb on - strand, within HP15_3550 at 3740.177 kb on - strand, within HP15_3550 at 3740.184 kb on + strand, within HP15_3550 at 3740.252 kb on - strand, within HP15_3550 at 3740.252 kb on - strand, within HP15_3550 at 3740.285 kb on - strand, within HP15_3550 at 3740.339 kb on + strand, within HP15_3550 at 3740.384 kb on + strand, within HP15_3550 at 3740.404 kb on + strand, within HP15_3550 at 3740.412 kb on - strand, within HP15_3550 at 3740.412 kb on - strand, within HP15_3550 at 3740.420 kb on + strand, within HP15_3550 at 3740.423 kb on - strand, within HP15_3550 at 3740.494 kb on - strand, within HP15_3550 at 3740.636 kb on + strand, within HP15_3550 at 3740.651 kb on - strand, within HP15_3550 at 3740.670 kb on - strand, within HP15_3550 at 3740.704 kb on + strand, within HP15_3550 at 3740.723 kb on + strand, within HP15_3550 at 3740.796 kb on + strand, within HP15_3550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,737,209 + -1.1 3,737,214 + -1.0 3,737,214 + -0.7 3,737,214 + +0.1 3,737,214 + +0.2 3,737,222 - -2.2 3,737,222 - +1.1 3,737,224 + +0.0 3,737,233 + +0.4 3,737,233 + -1.8 3,737,266 - -1.2 3,737,305 + -1.9 3,737,313 - +0.9 3,737,341 - +0.6 3,737,390 - -0.3 3,737,416 + HP15_3547 0.24 +0.2 3,737,424 - HP15_3547 0.31 +1.0 3,737,484 - -0.3 3,737,590 + HP15_3548 0.22 -0.5 3,737,590 + HP15_3548 0.22 +0.7 3,737,598 - HP15_3548 0.24 +0.4 3,737,603 - HP15_3548 0.25 +0.0 3,737,605 - HP15_3548 0.25 +0.2 3,737,614 + HP15_3548 0.27 -0.3 3,737,622 - HP15_3548 0.29 -0.7 3,737,706 + HP15_3548 0.46 +0.0 3,737,708 - HP15_3548 0.47 +0.5 3,737,747 - HP15_3548 0.55 +1.0 3,737,763 - HP15_3548 0.58 -0.1 3,737,814 + HP15_3548 0.69 -0.3 3,737,847 - HP15_3548 0.76 -3.1 3,737,848 - HP15_3548 0.76 -0.3 3,737,907 - HP15_3548 0.88 -0.5 3,737,977 + -1.7 3,738,001 + -0.1 3,738,023 - +0.2 3,738,166 - +0.2 3,738,197 + +0.2 3,738,240 - +1.0 3,738,251 - +0.5 3,738,259 + +0.9 3,738,269 + -0.2 3,738,329 + HP15_3549 0.12 -1.5 3,738,329 + HP15_3549 0.12 +0.5 3,738,329 + HP15_3549 0.12 -0.0 3,738,329 + HP15_3549 0.12 +1.3 3,738,329 + HP15_3549 0.12 +0.2 3,738,337 - HP15_3549 0.13 +0.5 3,738,337 - HP15_3549 0.13 -0.1 3,738,377 + HP15_3549 0.15 +0.2 3,738,385 - HP15_3549 0.15 -0.7 3,738,504 + HP15_3549 0.22 -0.9 3,738,525 + HP15_3549 0.23 -0.4 3,738,685 - HP15_3549 0.33 +0.1 3,738,729 + HP15_3549 0.35 -1.1 3,738,740 - HP15_3549 0.36 -0.2 3,738,774 + HP15_3549 0.38 +0.1 3,738,775 - HP15_3549 0.38 +0.1 3,738,842 - HP15_3549 0.42 +0.2 3,738,924 - HP15_3549 0.47 +0.4 3,738,966 - HP15_3549 0.49 +2.1 3,738,985 - HP15_3549 0.50 -2.2 3,739,004 + HP15_3549 0.51 -0.1 3,739,042 + HP15_3549 0.53 -1.5 3,739,071 - HP15_3549 0.55 +0.4 3,739,182 + HP15_3549 0.62 -2.3 3,739,197 + HP15_3549 0.62 +0.1 3,739,283 - HP15_3549 0.67 +0.3 3,739,435 - HP15_3549 0.76 -1.3 3,739,448 + HP15_3549 0.77 -1.3 3,739,526 + HP15_3549 0.82 -1.8 3,739,530 - HP15_3549 0.82 +0.6 3,739,534 - HP15_3549 0.82 -1.6 3,739,557 + HP15_3549 0.83 -2.5 3,739,797 - -2.1 3,739,802 - +0.5 3,739,918 - -0.4 3,739,918 - +0.2 3,740,011 + HP15_3550 0.12 -0.5 3,740,037 + HP15_3550 0.14 -0.3 3,740,045 - HP15_3550 0.15 +0.2 3,740,094 + HP15_3550 0.20 +0.7 3,740,095 + HP15_3550 0.20 -2.2 3,740,136 - HP15_3550 0.24 +0.5 3,740,177 - HP15_3550 0.28 +0.5 3,740,184 + HP15_3550 0.29 -0.8 3,740,252 - HP15_3550 0.35 -2.2 3,740,252 - HP15_3550 0.35 -0.2 3,740,285 - HP15_3550 0.38 -0.7 3,740,339 + HP15_3550 0.44 -0.0 3,740,384 + HP15_3550 0.48 +0.3 3,740,404 + HP15_3550 0.50 +0.1 3,740,412 - HP15_3550 0.51 -1.0 3,740,412 - HP15_3550 0.51 -0.5 3,740,420 + HP15_3550 0.51 +0.2 3,740,423 - HP15_3550 0.52 +0.1 3,740,494 - HP15_3550 0.59 -1.3 3,740,636 + HP15_3550 0.72 +0.7 3,740,651 - HP15_3550 0.74 -0.3 3,740,670 - HP15_3550 0.76 -0.5 3,740,704 + HP15_3550 0.79 +0.4 3,740,723 + HP15_3550 0.81 +0.3 3,740,796 + HP15_3550 0.88 -0.3
Or see this region's nucleotide sequence