Strain Fitness in Marinobacter adhaerens HP15 around HP15_3549

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3546 and HP15_3547 overlap by 1 nucleotidesHP15_3547 and HP15_3548 overlap by 23 nucleotidesHP15_3548 and HP15_3549 are separated by 156 nucleotidesHP15_3549 and HP15_3550 are separated by 46 nucleotides HP15_3546: HP15_3546 - copper-translocating P-type ATPase, at 3,734,767 to 3,737,388 _3546 HP15_3547: HP15_3547 - hypothetical protein, at 3,737,388 to 3,737,504 _3547 HP15_3548: HP15_3548 - metal-binding protein, at 3,737,482 to 3,737,964 _3548 HP15_3549: HP15_3549 - diguanylate cyclase, at 3,738,121 to 3,739,842 _3549 HP15_3550: HP15_3550 - conserved hypothetical protein, at 3,739,889 to 3,740,920 _3550 Position (kb) 3738 3739 3740Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3737.209 kb on + strandat 3737.214 kb on + strandat 3737.214 kb on + strandat 3737.214 kb on + strandat 3737.214 kb on + strandat 3737.222 kb on - strandat 3737.222 kb on - strandat 3737.224 kb on + strandat 3737.233 kb on + strandat 3737.233 kb on + strandat 3737.266 kb on - strandat 3737.305 kb on + strandat 3737.313 kb on - strandat 3737.341 kb on - strandat 3737.390 kb on - strandat 3737.416 kb on + strand, within HP15_3547at 3737.424 kb on - strand, within HP15_3547at 3737.484 kb on - strandat 3737.590 kb on + strand, within HP15_3548at 3737.590 kb on + strand, within HP15_3548at 3737.598 kb on - strand, within HP15_3548at 3737.603 kb on - strand, within HP15_3548at 3737.605 kb on - strand, within HP15_3548at 3737.614 kb on + strand, within HP15_3548at 3737.622 kb on - strand, within HP15_3548at 3737.706 kb on + strand, within HP15_3548at 3737.708 kb on - strand, within HP15_3548at 3737.747 kb on - strand, within HP15_3548at 3737.763 kb on - strand, within HP15_3548at 3737.814 kb on + strand, within HP15_3548at 3737.847 kb on - strand, within HP15_3548at 3737.848 kb on - strand, within HP15_3548at 3737.907 kb on - strand, within HP15_3548at 3737.977 kb on + strandat 3738.001 kb on + strandat 3738.023 kb on - strandat 3738.166 kb on - strandat 3738.197 kb on + strandat 3738.240 kb on - strandat 3738.251 kb on - strandat 3738.259 kb on + strandat 3738.269 kb on + strandat 3738.329 kb on + strand, within HP15_3549at 3738.329 kb on + strand, within HP15_3549at 3738.329 kb on + strand, within HP15_3549at 3738.329 kb on + strand, within HP15_3549at 3738.329 kb on + strand, within HP15_3549at 3738.337 kb on - strand, within HP15_3549at 3738.337 kb on - strand, within HP15_3549at 3738.377 kb on + strand, within HP15_3549at 3738.385 kb on - strand, within HP15_3549at 3738.504 kb on + strand, within HP15_3549at 3738.525 kb on + strand, within HP15_3549at 3738.685 kb on - strand, within HP15_3549at 3738.729 kb on + strand, within HP15_3549at 3738.740 kb on - strand, within HP15_3549at 3738.774 kb on + strand, within HP15_3549at 3738.775 kb on - strand, within HP15_3549at 3738.842 kb on - strand, within HP15_3549at 3738.924 kb on - strand, within HP15_3549at 3738.966 kb on - strand, within HP15_3549at 3738.985 kb on - strand, within HP15_3549at 3739.004 kb on + strand, within HP15_3549at 3739.042 kb on + strand, within HP15_3549at 3739.071 kb on - strand, within HP15_3549at 3739.182 kb on + strand, within HP15_3549at 3739.197 kb on + strand, within HP15_3549at 3739.283 kb on - strand, within HP15_3549at 3739.435 kb on - strand, within HP15_3549at 3739.448 kb on + strand, within HP15_3549at 3739.526 kb on + strand, within HP15_3549at 3739.530 kb on - strand, within HP15_3549at 3739.534 kb on - strand, within HP15_3549at 3739.557 kb on + strand, within HP15_3549at 3739.797 kb on - strandat 3739.802 kb on - strandat 3739.918 kb on - strandat 3739.918 kb on - strandat 3740.011 kb on + strand, within HP15_3550at 3740.037 kb on + strand, within HP15_3550at 3740.045 kb on - strand, within HP15_3550at 3740.094 kb on + strand, within HP15_3550at 3740.095 kb on + strand, within HP15_3550at 3740.136 kb on - strand, within HP15_3550at 3740.177 kb on - strand, within HP15_3550at 3740.184 kb on + strand, within HP15_3550at 3740.252 kb on - strand, within HP15_3550at 3740.252 kb on - strand, within HP15_3550at 3740.285 kb on - strand, within HP15_3550at 3740.339 kb on + strand, within HP15_3550at 3740.384 kb on + strand, within HP15_3550at 3740.404 kb on + strand, within HP15_3550at 3740.412 kb on - strand, within HP15_3550at 3740.412 kb on - strand, within HP15_3550at 3740.420 kb on + strand, within HP15_3550at 3740.423 kb on - strand, within HP15_3550at 3740.494 kb on - strand, within HP15_3550at 3740.636 kb on + strand, within HP15_3550at 3740.651 kb on - strand, within HP15_3550at 3740.670 kb on - strand, within HP15_3550at 3740.704 kb on + strand, within HP15_3550at 3740.723 kb on + strand, within HP15_3550at 3740.796 kb on + strand, within HP15_3550

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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3,737,209 + -1.1
3,737,214 + -1.0
3,737,214 + -0.7
3,737,214 + +0.1
3,737,214 + +0.2
3,737,222 - -2.2
3,737,222 - +1.1
3,737,224 + +0.0
3,737,233 + +0.4
3,737,233 + -1.8
3,737,266 - -1.2
3,737,305 + -1.9
3,737,313 - +0.9
3,737,341 - +0.6
3,737,390 - -0.3
3,737,416 + HP15_3547 0.24 +0.2
3,737,424 - HP15_3547 0.31 +1.0
3,737,484 - -0.3
3,737,590 + HP15_3548 0.22 -0.5
3,737,590 + HP15_3548 0.22 +0.7
3,737,598 - HP15_3548 0.24 +0.4
3,737,603 - HP15_3548 0.25 +0.0
3,737,605 - HP15_3548 0.25 +0.2
3,737,614 + HP15_3548 0.27 -0.3
3,737,622 - HP15_3548 0.29 -0.7
3,737,706 + HP15_3548 0.46 +0.0
3,737,708 - HP15_3548 0.47 +0.5
3,737,747 - HP15_3548 0.55 +1.0
3,737,763 - HP15_3548 0.58 -0.1
3,737,814 + HP15_3548 0.69 -0.3
3,737,847 - HP15_3548 0.76 -3.1
3,737,848 - HP15_3548 0.76 -0.3
3,737,907 - HP15_3548 0.88 -0.5
3,737,977 + -1.7
3,738,001 + -0.1
3,738,023 - +0.2
3,738,166 - +0.2
3,738,197 + +0.2
3,738,240 - +1.0
3,738,251 - +0.5
3,738,259 + +0.9
3,738,269 + -0.2
3,738,329 + HP15_3549 0.12 -1.5
3,738,329 + HP15_3549 0.12 +0.5
3,738,329 + HP15_3549 0.12 -0.0
3,738,329 + HP15_3549 0.12 +1.3
3,738,329 + HP15_3549 0.12 +0.2
3,738,337 - HP15_3549 0.13 +0.5
3,738,337 - HP15_3549 0.13 -0.1
3,738,377 + HP15_3549 0.15 +0.2
3,738,385 - HP15_3549 0.15 -0.7
3,738,504 + HP15_3549 0.22 -0.9
3,738,525 + HP15_3549 0.23 -0.4
3,738,685 - HP15_3549 0.33 +0.1
3,738,729 + HP15_3549 0.35 -1.1
3,738,740 - HP15_3549 0.36 -0.2
3,738,774 + HP15_3549 0.38 +0.1
3,738,775 - HP15_3549 0.38 +0.1
3,738,842 - HP15_3549 0.42 +0.2
3,738,924 - HP15_3549 0.47 +0.4
3,738,966 - HP15_3549 0.49 +2.1
3,738,985 - HP15_3549 0.50 -2.2
3,739,004 + HP15_3549 0.51 -0.1
3,739,042 + HP15_3549 0.53 -1.5
3,739,071 - HP15_3549 0.55 +0.4
3,739,182 + HP15_3549 0.62 -2.3
3,739,197 + HP15_3549 0.62 +0.1
3,739,283 - HP15_3549 0.67 +0.3
3,739,435 - HP15_3549 0.76 -1.3
3,739,448 + HP15_3549 0.77 -1.3
3,739,526 + HP15_3549 0.82 -1.8
3,739,530 - HP15_3549 0.82 +0.6
3,739,534 - HP15_3549 0.82 -1.6
3,739,557 + HP15_3549 0.83 -2.5
3,739,797 - -2.1
3,739,802 - +0.5
3,739,918 - -0.4
3,739,918 - +0.2
3,740,011 + HP15_3550 0.12 -0.5
3,740,037 + HP15_3550 0.14 -0.3
3,740,045 - HP15_3550 0.15 +0.2
3,740,094 + HP15_3550 0.20 +0.7
3,740,095 + HP15_3550 0.20 -2.2
3,740,136 - HP15_3550 0.24 +0.5
3,740,177 - HP15_3550 0.28 +0.5
3,740,184 + HP15_3550 0.29 -0.8
3,740,252 - HP15_3550 0.35 -2.2
3,740,252 - HP15_3550 0.35 -0.2
3,740,285 - HP15_3550 0.38 -0.7
3,740,339 + HP15_3550 0.44 -0.0
3,740,384 + HP15_3550 0.48 +0.3
3,740,404 + HP15_3550 0.50 +0.1
3,740,412 - HP15_3550 0.51 -1.0
3,740,412 - HP15_3550 0.51 -0.5
3,740,420 + HP15_3550 0.51 +0.2
3,740,423 - HP15_3550 0.52 +0.1
3,740,494 - HP15_3550 0.59 -1.3
3,740,636 + HP15_3550 0.72 +0.7
3,740,651 - HP15_3550 0.74 -0.3
3,740,670 - HP15_3550 0.76 -0.5
3,740,704 + HP15_3550 0.79 +0.4
3,740,723 + HP15_3550 0.81 +0.3
3,740,796 + HP15_3550 0.88 -0.3

Or see this region's nucleotide sequence