Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3372 and HP15_3373 are separated by 170 nucleotides HP15_3373 and HP15_3374 are separated by 239 nucleotides HP15_3374 and HP15_3375 are separated by 17 nucleotides
HP15_3372: HP15_3372 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,539,016 to 3,539,711
_3372
HP15_3373: HP15_3373 - cold shock, CspA, at 3,539,882 to 3,540,088
_3373
HP15_3374: HP15_3374 - protein CrcB-like protein, at 3,540,328 to 3,540,708
_3374
HP15_3375: HP15_3375 - acyl-coenzyme A dehydrogenase, at 3,540,726 to 3,543,176
_3375
Position (kb)
3540
3541 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3539.383 kb on + strand, within HP15_3372 at 3539.438 kb on + strand, within HP15_3372 at 3539.580 kb on + strand, within HP15_3372 at 3539.674 kb on - strand at 3539.674 kb on - strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.918 kb on - strand, within HP15_3373 at 3540.146 kb on + strand at 3540.197 kb on + strand at 3540.375 kb on + strand, within HP15_3374 at 3540.402 kb on - strand, within HP15_3374 at 3540.575 kb on + strand, within HP15_3374 at 3540.703 kb on + strand at 3540.708 kb on + strand at 3540.867 kb on + strand at 3540.885 kb on - strand at 3540.969 kb on + strand at 3540.969 kb on + strand at 3540.977 kb on - strand, within HP15_3375 at 3541.346 kb on + strand, within HP15_3375 at 3541.415 kb on + strand, within HP15_3375 at 3541.416 kb on + strand, within HP15_3375 at 3541.673 kb on - strand, within HP15_3375 at 3541.690 kb on - strand, within HP15_3375 at 3541.690 kb on - strand, within HP15_3375 at 3541.700 kb on - strand, within HP15_3375
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,539,383 + HP15_3372 0.53 -0.3 3,539,438 + HP15_3372 0.61 -3.2 3,539,580 + HP15_3372 0.81 +0.0 3,539,674 - +0.2 3,539,674 - -0.1 3,539,692 + +0.2 3,539,692 + +0.2 3,539,692 + -0.3 3,539,918 - HP15_3373 0.17 +0.1 3,540,146 + +0.3 3,540,197 + +1.7 3,540,375 + HP15_3374 0.12 -1.9 3,540,402 - HP15_3374 0.19 -1.5 3,540,575 + HP15_3374 0.65 -2.5 3,540,703 + -0.9 3,540,708 + -1.5 3,540,867 + +0.8 3,540,885 - +0.2 3,540,969 + -0.9 3,540,969 + -1.4 3,540,977 - HP15_3375 0.10 -1.1 3,541,346 + HP15_3375 0.25 -1.5 3,541,415 + HP15_3375 0.28 -0.5 3,541,416 + HP15_3375 0.28 -1.2 3,541,673 - HP15_3375 0.39 +1.4 3,541,690 - HP15_3375 0.39 +0.9 3,541,690 - HP15_3375 0.39 +0.3 3,541,700 - HP15_3375 0.40 +0.1
Or see this region's nucleotide sequence