Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3052 and HP15_3053 are separated by 28 nucleotides HP15_3053 and HP15_3054 are separated by 156 nucleotides
HP15_3052: HP15_3052 - ATP-dependent protease La-like protein, at 3,201,551 to 3,204,016
_3052
HP15_3053: HP15_3053 - transcriptional regulator, MarR family protein, at 3,204,045 to 3,204,539
_3053
HP15_3054: HP15_3054 - TPR repeat containing protein, at 3,204,696 to 3,205,613
_3054
Position (kb)
3204
3205 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3203.045 kb on - strand, within HP15_3052 at 3203.376 kb on + strand, within HP15_3052 at 3203.413 kb on + strand, within HP15_3052 at 3203.462 kb on + strand, within HP15_3052 at 3203.470 kb on - strand, within HP15_3052 at 3203.475 kb on - strand, within HP15_3052 at 3203.475 kb on - strand, within HP15_3052 at 3203.482 kb on + strand, within HP15_3052 at 3203.500 kb on - strand, within HP15_3052 at 3203.543 kb on - strand, within HP15_3052 at 3203.565 kb on - strand, within HP15_3052 at 3203.588 kb on + strand, within HP15_3052 at 3203.628 kb on - strand, within HP15_3052 at 3203.679 kb on + strand, within HP15_3052 at 3203.753 kb on + strand, within HP15_3052 at 3203.950 kb on + strand at 3204.179 kb on + strand, within HP15_3053 at 3204.229 kb on + strand, within HP15_3053 at 3204.357 kb on - strand, within HP15_3053 at 3204.359 kb on + strand, within HP15_3053 at 3204.359 kb on + strand, within HP15_3053 at 3204.364 kb on + strand, within HP15_3053 at 3204.426 kb on + strand, within HP15_3053 at 3204.512 kb on - strand at 3204.513 kb on + strand at 3204.652 kb on + strand at 3204.654 kb on + strand at 3204.660 kb on - strand at 3204.684 kb on - strand at 3204.686 kb on + strand at 3204.842 kb on + strand, within HP15_3054 at 3204.860 kb on + strand, within HP15_3054 at 3204.913 kb on + strand, within HP15_3054 at 3205.128 kb on - strand, within HP15_3054 at 3205.257 kb on - strand, within HP15_3054 at 3205.257 kb on - strand, within HP15_3054 at 3205.285 kb on + strand, within HP15_3054 at 3205.305 kb on - strand, within HP15_3054 at 3205.366 kb on - strand, within HP15_3054 at 3205.429 kb on - strand, within HP15_3054
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 3,203,045 - HP15_3052 0.61 -1.9 3,203,376 + HP15_3052 0.74 +0.2 3,203,413 + HP15_3052 0.76 +0.3 3,203,462 + HP15_3052 0.77 +1.3 3,203,470 - HP15_3052 0.78 +0.0 3,203,475 - HP15_3052 0.78 +0.5 3,203,475 - HP15_3052 0.78 -1.5 3,203,482 + HP15_3052 0.78 +0.0 3,203,500 - HP15_3052 0.79 +0.1 3,203,543 - HP15_3052 0.81 -0.7 3,203,565 - HP15_3052 0.82 +1.0 3,203,588 + HP15_3052 0.83 +0.4 3,203,628 - HP15_3052 0.84 -0.3 3,203,679 + HP15_3052 0.86 -1.1 3,203,753 + HP15_3052 0.89 +0.3 3,203,950 + +0.2 3,204,179 + HP15_3053 0.27 -4.3 3,204,229 + HP15_3053 0.37 -3.9 3,204,357 - HP15_3053 0.63 -0.6 3,204,359 + HP15_3053 0.63 -3.3 3,204,359 + HP15_3053 0.63 -3.2 3,204,364 + HP15_3053 0.64 -4.7 3,204,426 + HP15_3053 0.77 -3.8 3,204,512 - -4.3 3,204,513 + -3.6 3,204,652 + -3.6 3,204,654 + -0.6 3,204,660 - +0.2 3,204,684 - -2.2 3,204,686 + -0.6 3,204,842 + HP15_3054 0.16 -2.0 3,204,860 + HP15_3054 0.18 -1.4 3,204,913 + HP15_3054 0.24 +0.4 3,205,128 - HP15_3054 0.47 -1.5 3,205,257 - HP15_3054 0.61 -1.7 3,205,257 - HP15_3054 0.61 +0.3 3,205,285 + HP15_3054 0.64 -1.7 3,205,305 - HP15_3054 0.66 -0.6 3,205,366 - HP15_3054 0.73 +0.6 3,205,429 - HP15_3054 0.80 -0.6
Or see this region's nucleotide sequence