Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2695 and HP15_2696 are separated by 59 nucleotides HP15_2696 and HP15_2697 are separated by 327 nucleotides
HP15_2695: HP15_2695 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data) , at 2,847,077 to 2,848,324
_2695
HP15_2696: HP15_2696 - phenylacetate-CoA ligase, at 2,848,384 to 2,849,694
_2696
HP15_2697: HP15_2697 - phenylacetate-CoA oxygenase, PaaG subunit, at 2,850,022 to 2,851,014
_2697
Position (kb)
2848
2849
2850 Strain fitness (log2 ratio)
-2
-1
0
1 at 2847.422 kb on + strand, within HP15_2695 at 2847.457 kb on - strand, within HP15_2695 at 2847.642 kb on + strand, within HP15_2695 at 2847.662 kb on - strand, within HP15_2695 at 2847.900 kb on + strand, within HP15_2695 at 2847.908 kb on - strand, within HP15_2695 at 2847.978 kb on - strand, within HP15_2695 at 2848.073 kb on + strand, within HP15_2695 at 2848.078 kb on + strand, within HP15_2695 at 2848.179 kb on + strand, within HP15_2695 at 2848.202 kb on - strand at 2848.280 kb on - strand at 2848.282 kb on + strand at 2848.350 kb on + strand at 2848.374 kb on + strand at 2848.436 kb on + strand at 2848.467 kb on - strand at 2848.522 kb on + strand, within HP15_2696 at 2848.706 kb on + strand, within HP15_2696 at 2848.706 kb on + strand, within HP15_2696 at 2848.777 kb on + strand, within HP15_2696 at 2848.781 kb on + strand, within HP15_2696 at 2848.798 kb on + strand, within HP15_2696 at 2848.810 kb on + strand, within HP15_2696 at 2848.813 kb on - strand, within HP15_2696 at 2848.873 kb on - strand, within HP15_2696 at 2849.046 kb on + strand, within HP15_2696 at 2849.100 kb on + strand, within HP15_2696 at 2849.134 kb on - strand, within HP15_2696 at 2849.254 kb on + strand, within HP15_2696 at 2849.256 kb on - strand, within HP15_2696 at 2849.303 kb on + strand, within HP15_2696 at 2849.311 kb on - strand, within HP15_2696 at 2849.491 kb on + strand, within HP15_2696 at 2849.545 kb on + strand, within HP15_2696 at 2849.616 kb on + strand at 2849.634 kb on - strand at 2849.689 kb on - strand at 2849.716 kb on - strand at 2849.814 kb on - strand at 2849.976 kb on + strand at 2849.985 kb on + strand at 2849.993 kb on - strand at 2850.001 kb on - strand at 2850.065 kb on + strand at 2850.180 kb on + strand, within HP15_2697 at 2850.241 kb on - strand, within HP15_2697 at 2850.305 kb on + strand, within HP15_2697 at 2850.323 kb on - strand, within HP15_2697
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 2,847,422 + HP15_2695 0.28 +0.4 2,847,457 - HP15_2695 0.30 +0.2 2,847,642 + HP15_2695 0.45 +1.0 2,847,662 - HP15_2695 0.47 +0.3 2,847,900 + HP15_2695 0.66 -1.1 2,847,908 - HP15_2695 0.67 -0.7 2,847,978 - HP15_2695 0.72 +0.2 2,848,073 + HP15_2695 0.80 +0.3 2,848,078 + HP15_2695 0.80 +0.0 2,848,179 + HP15_2695 0.88 +0.2 2,848,202 - +0.8 2,848,280 - -0.5 2,848,282 + -0.8 2,848,350 + -1.1 2,848,374 + -0.2 2,848,436 + -0.2 2,848,467 - -0.1 2,848,522 + HP15_2696 0.11 -2.0 2,848,706 + HP15_2696 0.25 -1.9 2,848,706 + HP15_2696 0.25 -2.0 2,848,777 + HP15_2696 0.30 -0.1 2,848,781 + HP15_2696 0.30 +0.4 2,848,798 + HP15_2696 0.32 +0.7 2,848,810 + HP15_2696 0.32 -0.8 2,848,813 - HP15_2696 0.33 -0.2 2,848,873 - HP15_2696 0.37 +0.4 2,849,046 + HP15_2696 0.50 +0.2 2,849,100 + HP15_2696 0.55 +0.4 2,849,134 - HP15_2696 0.57 +0.2 2,849,254 + HP15_2696 0.66 +1.5 2,849,256 - HP15_2696 0.67 -0.2 2,849,303 + HP15_2696 0.70 -0.8 2,849,311 - HP15_2696 0.71 -0.3 2,849,491 + HP15_2696 0.84 -1.3 2,849,545 + HP15_2696 0.89 -0.4 2,849,616 + +0.2 2,849,634 - -1.8 2,849,689 - +0.3 2,849,716 - -0.5 2,849,814 - +0.3 2,849,976 + -0.4 2,849,985 + -0.1 2,849,993 - +1.3 2,850,001 - -0.3 2,850,065 + -1.0 2,850,180 + HP15_2697 0.16 +0.1 2,850,241 - HP15_2697 0.22 +0.4 2,850,305 + HP15_2697 0.28 +1.4 2,850,323 - HP15_2697 0.30 +0.7
Or see this region's nucleotide sequence