Strain Fitness in Marinobacter adhaerens HP15 around HP15_2524

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2522 and HP15_2523 are separated by 35 nucleotidesHP15_2523 and HP15_2524 are separated by 67 nucleotidesHP15_2524 and HP15_2525 are separated by 399 nucleotides HP15_2522: HP15_2522 - methyl-accepting chemotaxis sensory transducer, at 2,663,035 to 2,664,672 _2522 HP15_2523: HP15_2523 - hypothetical protein, at 2,664,708 to 2,665,289 _2523 HP15_2524: HP15_2524 - inner membrane protein, at 2,665,357 to 2,665,902 _2524 HP15_2525: HP15_2525 - EAL domain protein, at 2,666,302 to 2,667,714 _2525 Position (kb) 2665 2666Strain fitness (log2 ratio) -2 -1 0 1at 2664.441 kb on + strand, within HP15_2522at 2664.478 kb on - strand, within HP15_2522at 2664.488 kb on - strand, within HP15_2522at 2664.516 kb on + strandat 2664.516 kb on + strandat 2664.545 kb on + strandat 2664.568 kb on + strandat 2664.680 kb on + strandat 2664.901 kb on - strand, within HP15_2523at 2664.910 kb on - strand, within HP15_2523at 2665.450 kb on + strand, within HP15_2524at 2665.484 kb on + strand, within HP15_2524at 2665.585 kb on + strand, within HP15_2524at 2665.641 kb on + strand, within HP15_2524at 2665.752 kb on + strand, within HP15_2524at 2665.811 kb on + strand, within HP15_2524at 2665.927 kb on - strandat 2665.927 kb on - strandat 2666.101 kb on + strandat 2666.105 kb on + strandat 2666.136 kb on - strandat 2666.250 kb on + strandat 2666.478 kb on - strand, within HP15_2525at 2666.596 kb on + strand, within HP15_2525at 2666.609 kb on - strand, within HP15_2525at 2666.757 kb on + strand, within HP15_2525at 2666.784 kb on - strand, within HP15_2525

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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2,664,441 + HP15_2522 0.86 -1.9
2,664,478 - HP15_2522 0.88 +0.5
2,664,488 - HP15_2522 0.89 -0.8
2,664,516 + -0.3
2,664,516 + -2.6
2,664,545 + +0.2
2,664,568 + +0.3
2,664,680 + +0.4
2,664,901 - HP15_2523 0.33 +0.0
2,664,910 - HP15_2523 0.35 -1.4
2,665,450 + HP15_2524 0.17 -0.7
2,665,484 + HP15_2524 0.23 -0.2
2,665,585 + HP15_2524 0.42 +0.1
2,665,641 + HP15_2524 0.52 +0.9
2,665,752 + HP15_2524 0.72 -1.0
2,665,811 + HP15_2524 0.83 +0.3
2,665,927 - +0.2
2,665,927 - +0.4
2,666,101 + -1.7
2,666,105 + -1.6
2,666,136 - -0.7
2,666,250 + -0.6
2,666,478 - HP15_2525 0.12 -0.7
2,666,596 + HP15_2525 0.21 -1.3
2,666,609 - HP15_2525 0.22 +0.4
2,666,757 + HP15_2525 0.32 -1.8
2,666,784 - HP15_2525 0.34 -1.7

Or see this region's nucleotide sequence